Chloroflexales

{{Short description|Order of bacteria}}

{{automatic taxobox

| taxon = Chloroflexales

| authority = Gupta et al. 2013

| subdivision_ranks = Families

| subdivision =

  • Chloroflexineae
  • Chloroflexaceae
  • Oscillochloridaceae
  • Roseiflexineae
  • Roseiflexaceae

}}

Chloroflexales is an order of bacteria in the class Chloroflexia.{{cite book|last=Garrity|first=George M.|title=Bergey's manual of systematic bacteriology|url=https://archive.org/details/bergeysmanualofs00boon|url-access=registration|date=2001|publisher=Springer|location=New York|isbn=978-0-387-21609-6|pages=[https://archive.org/details/bergeysmanualofs00boon/page/427 427–446]|edition=2nd}} The clade is also known as filamentous anoxygenic phototrophic bacteria (FAP),{{cite journal |last1=Thweatt |first1=Jennifer L. |last2=Canniffe |first2=Daniel P. |last3=Bryant |first3=Donald A. |title=Biosynthesis of chlorophylls and bacteriochlorophylls in green bacteria |journal=Advances in Botanical Research |date=2019 |volume=90 |pages=35–89 |doi=10.1016/bs.abr.2019.03.002}} as the order contains phototrophs that do not produce oxygen. These bacteria are facultative aerobic.{{cite journal |vauthors=Gupta RS, Chander P, George S |title=Phylogenetic framework and molecular signatures for the class Chloroflexia and its different clades; proposal for division of the class Chloroflexia class. nov. [corrected] into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. |journal= Antonie van Leeuwenhoek |volume=103|issue=1|pages=99–119 |date=2013|pmid=22903492 |doi=10.1007/s10482-012-9790-3 }} They generally use chemotrophy when oxygen is present and switch to light-derived energy when otherwise. Most species are heterotrophs, but a few are capable of photoautotrophy.

The order can be divided into two suborders. Chloroflexineae ("Green FAP", "green non-sulfur bacteria") is the better-known one. This suborder uses chlorosomes, a specialized antenna complex, to pass light energy to the reaction center. Roseiflexineae ("Red FAP") on the other hand has no such ability. The named colors are not absolute, as growth conditions such as oxygen concentration will make a green FAP appear green, brown, or reddish-orange by inducing changes in pigment composition.

Classification

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/order/chloroflexales |title=Chloroflexales |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN) |access-date=2022-07-20}} and National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=32064&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Chloroflexales |access-date=2022-07-20 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database |display-authors=etal}}

=Phylogeny=

class="wikitable"
colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}

! colspan=1 | 120 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}

style="vertical-align:top|

{{Clade | style=font-size:90%;line-height:80%

|1={{clade

|1={{clade

|label1=Kallotenuales

|1={{clade

|label1=Kallotenuaceae

|1=Kallotenue

}}

|label2=Herpetosiphonales

|2={{clade

|label1=Herpetosiphonaceae

|1=Herpetosiphon

}}

}}

|2={{clade

|label1=Chloroflexales

|1={{clade

|label1=Roseiflexaceae

|1=Roseiflexus

|label2=Chloroflexaceae

|2={{clade

|1=Heliothrix

|2={{clade

|1=Oscillochloris

|2=Chloroflexus

}}

}}

}}

}}

}}

}}

|

{{clade|style=font-size:90%;line-height:90%

|label1=Chloroflexales

|1={{Clade

|1={{clade

|label1=Kallotenuaceae

|1=Kallotenue

|label2=Herpetosiphonaceae

|2=Herpetosiphon

}}

|2={{clade

|label1=Roseiflexaceae

|1={{clade

|1=Roseiflexus

|2={{clade

|1="Ca. Ribeiella"

|2="Kouleothrix"

}}

}}

|label2=Chloroflexaceae

|2={{clade

|1=Chloroflexus

|2={{clade

|1=Oscillochloris

|2={{clade

|1="Ca. Chloroploca"

|2="Ca. Viridilinea"

}}

}}

}}

}}

}}

}}

=Taxonomy=

  • Suborder Roseiflexineae Gupta et al. 2013
  • Family Roseiflexaceae Gupta et al. 2013 ["Kouleotrichaceae" Mehrshad et al. 2018]
  • Genus ?Heliothrix Pierson et al. 1986
  • Genus "Kouleothrix" Kohno et al. 2002
  • Genus "Candidatus Ribeiella" Petriglieri et al. 2023
  • Genus Roseiflexus Hanada et al. 2002
  • Suborder Chloroflexineae Gupta et al. 2013
  • Family Chloroflexaceae Gupta et al. 2013
  • Genus ?"Candidatus Chloranaerofilum" Thiel et al. 2016
  • Genus Chloroflexus Pierson & Castenholz 1974 ["Chlorocrinis" Ward et al. 1998]
  • Family Oscillochloridaceae Gupta et al. 2013
  • Genus ?ChloronemaDubinina & Gorlenko 1975
  • Genus "Candidatus Chloroploca" Gorlenko et al. 2014
  • Genus Oscillochloris Gorlenko & Pivovarova 1989
  • Genus "Candidatus Viridilinea" Grouzdev et al. 2018

See also

References

{{Reflist}}