ClearVolume
ClearVolume is an open source real-time live 3D visualization library designed for high-end volumetric light sheet microscopes. ClearVolume enables the live visualization of microscope data - allowing the biologists to immediately decide whether a sample is worth imaging. ClearVolume can easily be integrated into existing Java, C/C++, Python, or LabVIEW based microscope software. It has a dedicated interface to MicroManager/OpenSpim/OpenSpin control software. ClearVolume supports multi-channels, live 3D data streaming from remote microscopes, and uses a multi-pass Fibonacci rendering algorithm that can handle large volumes. Moreover, ClearVolume is integrated into the FiJi/ImageJ2/KNIME ecosystem.
See also
References
{{reflist|refs=
{{cite journal
|author1=Royer, Loïc A |author2=Weigert, Martin |author3=Günther, Ulrik |author4=Maghelli, Nicola |author5=Jug, Florian |author6=Sbalzarini, Ivo F. |author7=Myers, Eugene W. | title = ClearVolume – Open-source live 3D visualization for light sheet microscopy.
| journal = Nature Methods
| volume = 12
|issue=6 | date = 2015
| url = http://www.nature.com/nmeth/journal/v12/n6/full/nmeth.3372.html
| doi = 10.1038/nmeth.3372 | pages=480–481 | pmid=26020498|s2cid=205423715 |url-access=subscription }}
}}
External links
- [https://clearvolume.github.io/] Website of the open source ClearVolume project with links to the wiki, code repositories and issue tracking.
- [https://tech.knime.org/book/clearvolume] ClearVolume KNIME plugin project page.
- [http://fiji.sc/ClearVolume] ClearVolume FiJi plugin project page.