Cyclin-dependent kinase inhibitor 1C

{{Short description|Protein-coding gene in the species Homo sapiens}}

Cyclin-dependent kinase inhibitor 1C (p57, Kip2), also known as CDKN1C, is a protein which in humans is encoded by the CDKN1C imprinted gene.{{cite web | title = Entrez Gene: CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2)| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1028}}

Function

Cyclin-dependent kinase inhibitor 1C is a tight-binding inhibitor of several G1 cyclin/Cdk complexes and a negative regulator of cell proliferation. Mutations of CDKN1C are implicated in sporadic cancers and Beckwith-Wiedemann syndrome suggesting that it is a tumor suppressor candidate.

CDKN1C is a tumor suppressor human gene on chromosome 11 (11p15) and belongs to the cip/kip gene family. It encodes a cell cycle inhibitor that binds to G1 cyclin-CDK complexes.{{cite journal | vauthors = Matsuoka S, Edwards MC, Bai C, Parker S, Zhang P, Baldini A, Harper JW, Elledge SJ | title = p57KIP2, a structurally distinct member of the p21CIP1 Cdk inhibitor family, is a candidate tumor suppressor gene | journal = Genes & Development | volume = 9 | issue = 6 | pages = 650–62 | date = Mar 1995 | pmid = 7729684 | doi = 10.1101/gad.9.6.650 | doi-access = free }} Thus p57KIP2 causes arrest of the cell cycle in G1 phase.

CDKN1C was found to lead to cancer cell dormancy; its gene expression is regulated through the activity of glucocorticoid receptors (GRs) through chromatin remodelling mediated by SWI/SNF.{{cite journal| vauthors = Prekovic S, Schuurman K, Mayayo-Peralta I, Manjón AG, Buijs M, Yavuz S, Wellenstein MD, Barrera A, Monkhorst K, Huber A, Morris B|title=Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer|journal=Nature Communications|volume=12|issue=1|date=July 2021| page = 4360|doi = 10.1038/s41467-021-24537-3| pmid = 34272384| pmc = 8285479|bibcode=2021NatCo..12.4360P | doi-access = free }}

Research Methods

Since it has been identified that mutation to this tumor suppressing gene can have dramatic effects in a newborn such as macroglossia there has been great research to determine the genetic significance. CDKN1C is prone to error during the process of gene imprinting. The process of gene imprinting is in concert with DNA methylation. This goes makes the gene become transcriptionally silent from the paternal side allowing the maternal gene to be active.{{cite web | vauthors = Amacher S | title = Epigenetics Impriting | work = University of California Berkeley | url = https://mcb.berkeley.edu/courses/mcb142/lecture%20topics/Amacher/LECTURE_13_Imprinting_F08.pdf}} If this gene fails to be properly [https://www.nature.com/articles/nrg2540 methylated], or obtains a mutation, there will be a lack of cell cycle suppression leading to the pediatric tumor growth.{{cite journal | vauthors = Cedar H, Bergman Y | title = Linking DNA methylation and histone modification: patterns and paradigms | journal = Nature Reviews. Genetics | volume = 10 | issue = 5 | pages = 295–304 | date = May 2009 | pmid = 19308066 | doi = 10.1038/nrg2540 | s2cid = 5450674 }}

Research methods for this gene have involved different sequencing methods such as [https://www.sciencedirect.com/topics/neuroscience/sanger-sequencing Sanger Sequencing]. This sequencing method is a three step process that involves PCR, Gel Electrophoresis, and computer analysis to determine DNA sequences.{{cite web | title = Sanger Sequencing Steps & Method | url = https://www.sigmaaldrich.com/US/en/technical-documents/protocol/genomics/sequencing/sanger-sequencing | work = Merck KGaA | location = Darmstadt, Germany }} Sequencing can be helpful in identifying base pair mutations. A study done to assess the phenotypic effects that mutations to this gene will have taken genetic sequencing of a cohort of individuals known to be effected by a mutation on this gene. {{cite journal | vauthors = Brioude F, Netchine I, Praz F, Le Jule M, Calmel C, Lacombe D, Edery P, Catala M, Odent S, Isidor B, Lyonnet S, Sigaudy S, Leheup B, Audebert-Bellanger S, Burglen L, Giuliano F, Alessandri JL, Cormier-Daire V, Laffargue F, Blesson S, Coupier I, Lespinasse J, Blanchet P, Boute O, Baumann C, Polak M, Doray B, Verloes A, Viot G, Le Bouc Y, Rossignol S | display-authors = 6 | title = Mutations of the Imprinted CDKN1C Gene as a Cause of the Overgrowth Beckwith-Wiedemann Syndrome: Clinical Spectrum and Functional Characterization | journal = Human Mutation | volume = 36 | issue = 9 | pages = 894–902 | date = September 2015 | pmid = 26077438 | doi = 10.1002/humu.22824 | s2cid = 37398295 | doi-access = free }} In this study, they found 37 mutations associated with 38 different pedigrees. This went to prove that mutations to the CDKN1C on chromosome 11 would in fact have phenotypic effects on individuals. These effects are further discussed through the different clinical cases that can occur.

Clinical significance

A mutation of this gene may lead to loss of control over the cell cycle leading to uncontrolled cellular proliferation. p57KIP2 has been associated with Beckwith-Wiedemann syndrome (BWS) which is characterized by increased risk of tumor formation in childhood.{{cite journal | vauthors = Hatada I, Nabetani A, Morisaki H, Xin Z, Ohishi S, Tonoki H, Niikawa N, Inoue M, Komoto Y, Okada A, Steichen E, Ohashi H, Fukushima Y, Nakayama M, Mukai T | title = New p57KIP2 mutations in Beckwith-Wiedemann syndrome | journal = Human Genetics | volume = 100 | issue = 5–6 | pages = 681–3 | date = Oct 1997 | pmid = 9341892 | doi = 10.1007/s004390050573 | s2cid = 21120202 }} Loss-of-function mutations in this gene have also been shown associated to the IMAGe syndrome (Intrauterine growth restriction, Metaphyseal dysplasia, Adrenal hypoplasia congenita, and Genital anomalies).{{cite journal | vauthors = Riccio A, Cubellis MV | title = Gain of function in CDKN1C | journal = Nature Genetics | volume = 44 | issue = 7 | pages = 737–8 | date = Jul 2012 | pmid = 22735584 | doi = 10.1038/ng.2336 | s2cid = 205345787 | doi-access = free }} Complete hydatidiform moles consist only of paternal DNA, and thus the cells lack p57 expression as the gene is paternally imprinted (silenced). Immunohistochemical stains for p57 can aid with the diagnosis of hydatidiform moles.{{cite journal | vauthors = LeGallo RD, Stelow EB, Ramirez NC, Atkins KA | title = Diagnosis of hydatidiform moles using p57 immunohistochemistry and HER2 fluorescent in situ hybridization | journal = American Journal of Clinical Pathology | volume = 129 | issue = 5 | pages = 749–755 | date = May 2008 | pmid = 18426735 | doi = 10.1309/7XRL378C22W7APBT | doi-access = free }}

Interactions

Cyclin-dependent kinase inhibitor 1C has been shown to interact with:

LIMK1,{{cite journal | vauthors = Yokoo T, Toyoshima H, Miura M, Wang Y, Iida KT, Suzuki H, Sone H, Shimano H, Gotoda T, Nishimori S, Tanaka K, Yamada N | title = p57Kip2 regulates actin dynamics by binding and translocating LIM-kinase 1 to the nucleus | journal = The Journal of Biological Chemistry | volume = 278 | issue = 52 | pages = 52919–23 | date = Dec 2003 | pmid = 14530263 | doi = 10.1074/jbc.M309334200 | doi-access = free }}
MYBL2,{{cite journal | vauthors = Joaquin M, Watson RJ | title = The cell cycle-regulated B-Myb transcription factor overcomes cyclin-dependent kinase inhibitory activity of p57(KIP2) by interacting with its cyclin-binding domain | journal = The Journal of Biological Chemistry | volume = 278 | issue = 45 | pages = 44255–64 | date = Nov 2003 | pmid = 12947099 | doi = 10.1074/jbc.M308953200 | doi-access = free }}
MyoD,{{cite journal | vauthors = Reynaud EG, Leibovitch MP, Tintignac LA, Pelpel K, Guillier M, Leibovitch SA | title = Stabilization of MyoD by direct binding to p57(Kip2) | journal = The Journal of Biological Chemistry | volume = 275 | issue = 25 | pages = 18767–76 | date = Jun 2000 | pmid = 10764802 | doi = 10.1074/jbc.M907412199 | doi-access = free }} and
PCNA.{{cite journal | vauthors = Watanabe H, Pan ZQ, Schreiber-Agus N, DePinho RA, Hurwitz J, Xiong Y | title = Suppression of cell transformation by the cyclin-dependent kinase inhibitor p57KIP2 requires binding to proliferating cell nuclear antigen | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 95 | issue = 4 | pages = 1392–7 | date = Feb 1998 | pmid = 9465025 | pmc = 19016 | doi = 10.1073/pnas.95.4.1392| bibcode = 1998PNAS...95.1392W | doi-access = free }}

References

External links

[https://www.ncbi.nlm.nih.gov/books/NBK1394/ GeneReviews/NIH/NCBI/UW entry on Beckwith-Wiedemann Syndrome]
{{UCSC genome browser|CDKN1C}}
{{UCSC gene details|CDKN1C}}

Category:Cell cycle

Category:Tumor suppressor genes