DDX11
{{Short description|Protein-coding gene in humans}}
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ATP-dependent DNA/RNA helicase DDX11 is an enzyme that in humans is encoded by the DDX11 gene.{{cite web | title = Entrez Gene: DDX11 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) | url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=1663 | accessdate = }} DDX11 is found within chromosome 12’s repetitive region.{{Cite journal | vauthors = Amitzi L, Cozma E, Tong AH, Chan K, Ross C, O'Neil N, Moffat J, Stirling P, Hieter P | title = Mapping of DDX11 genetic interactions defines sister chromatid cohesion as the major dependency | journal = G3 | location = Bethesda, Md. | volume = 14 | issue = 5 | date = 2024-05-07 | pmid = 38478595 | pmc = 11075568 | doi = 10.1093/g3journal/jkae052 | url = https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkae052/7628167 | language = en | issn = 2160-1836 | editor-first1 = G | editor-last1 = Brown }} Its function as a helicase was determined from its structure.
Function
This helicase is then regulated by long noncoding RNA and its ability to dismantle DNA triplexes known.{{Cite journal | vauthors = Mahtab M, Boavida A, Santos D, Pisani FM | title = The Genome Stability Maintenance DNA Helicase DDX11 and Its Role in Cancer | journal = Genes | volume = 12 | issue = 3 | pages = 395 | date = 2021-03-10 | pmid = 33802088 | pmc = 8000936 | doi = 10.3390/genes12030395 | language = en | doi-access = free | issn = 2073-4425 }} It works best in the positive direction of already split DNA - commonly the duplex form. DDX11's role in sister chromatid cohesion is an active area of research.
Structure
The structure of DDX11 is shown in the image where α-helices (blue) and β sheets (green) surround the DEAH box (red). The possible E2 binding domain was depicted in beige, this binding allows for papillomaviruses to persist in cells.
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly.
Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
See also
- Warsaw breakage syndrome, genetic condition caused by mutation of the DDX11
References
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Further reading
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- {{cite journal | vauthors = Baens M, Aerssens J, van Zand K | title = Isolation and regional assignment of human chromosome 12p cDNAs. | journal = Genomics | volume = 29 | issue = 1 | pages = 44–52 | year = 1996 | pmid = 8530100 | doi = 10.1006/geno.1995.1213 }}
- {{cite journal | vauthors = Frank S, Werner S | title = The human homologue of the yeast CHL1 gene is a novel keratinocyte growth factor-regulated gene. | journal = Journal of Biological Chemistry | volume = 271 | issue = 40 | pages = 24337–24340 | year = 1996 | pmid = 8798685 | doi = 10.1074/jbc.271.40.24337 | doi-access = free }}
- {{cite journal | vauthors = Amann J, Valentine M, Kidd VJ, Lahti JM | title = Localization of chi1-related helicase genes to human chromosome regions 12p11 and 12p13: similarity between parts of these genes and conserved human telomeric-associated DNA. | journal = Genomics | volume = 32 | issue = 2 | pages = 260–265 | year = 1997 | pmid = 8833153 | doi = 10.1006/geno.1996.0113 }}
- {{cite journal | vauthors = Amann J, Kidd VJ, Lahti JM | title = Characterization of putative human homologues of the yeast chromosome transmission fidelity gene, CHL1. | journal = Journal of Biological Chemistry | volume = 272 | issue = 6 | pages = 3823–3832 | year = 1997 | pmid = 9013641 | doi = 10.1074/jbc.272.6.3823 | doi-access = free }}
- {{cite journal | vauthors = Hirota Y, Lahti JM | title = Characterization of the enzymatic activity of hChlR1, a novel human DNA helicase. | journal = Nucleic Acids Research | volume = 28 | issue = 4 | pages = 917–924 | year = 2000 | pmid = 10648783 | pmc = 102573 | doi = 10.1093/nar/28.4.917 }}
- {{cite journal | vauthors = Strausberg RL, Feingold EA, Grouse LH | title = Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | journal = Proceedings of the National Academy of Sciences of the United States of America | volume = 99 | issue = 26 | pages = 16899–16903 | year = 2003 | pmid = 12477932 | pmc = 139241 | doi = 10.1073/pnas.242603899 | bibcode = 2002PNAS...9916899M | doi-access = free }}
- {{cite journal | vauthors = Ota T, Suzuki Y, Nishikawa T | title = Complete sequencing and characterization of 21,243 full-length human cDNAs. | journal = Nature Genetics | volume = 36 | issue = 1 | pages = 40–45 | year = 2004 | pmid = 14702039 | doi = 10.1038/ng1285 | doi-access = free }}
- {{cite journal | vauthors = Gerhard DS, Wagner L, Feingold EA | title = The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). | journal = Genome Research | volume = 14 | issue = 10B | pages = 2121–2127 | year = 2004 | pmid = 15489334 | pmc = 528928 | doi = 10.1101/gr.2596504 }}
- {{cite journal | vauthors = Vasa-Nicotera M, Brouilette S, Mangino M | title = Mapping of a major locus that determines telomere length in humans. | journal = American Journal of Human Genetics | volume = 76 | issue = 1 | pages = 147–151 | year = 2005 | pmid = 15520935 | pmc = 1196417 | doi = 10.1086/426734 }}
- {{cite journal | vauthors = Parish JL, Rosa J, Wang X | title = The DNA helicase ChlR1 is required for sister chromatid cohesion in mammalian cells. | journal = Journal of Cell Science | volume = 119 | issue = Pt 23 | pages = 4857–4865 | year = 2007 | pmid = 17105772 | doi = 10.1242/jcs.03262 | s2cid = 26412273 | doi-access = }}
- {{cite journal | vauthors = Parish JL, Bean AM, Park RB, Androphy EJ | title = ChlR1 is required for loading papillomavirus E2 onto mitotic chromosomes and viral genome maintenance. | journal = Molecular Cell | volume = 24 | issue = 6 | pages = 867–876 | year = 2007 | pmid = 17189189 | doi = 10.1016/j.molcel.2006.11.005 | doi-access = free }}
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