DEPTOR
{{Short description|Protein-coding gene in the species Homo sapiens}}
{{Infobox_gene}}
DEP domain-containing mTOR-interacting protein (DEPTOR) also known as DEP domain-containing protein 6 (DEPDC6) is a protein that in humans is encoded by the DEPTOR gene.{{cite web | title = Entrez Gene: DEPDC6 DEP domain containing 6| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=64798| accessdate = }}
Structure
The gene DEPTOR can be found only in vertebrates. In human, DEPTOR gene locates at chromosome 8, 8q24.12 with protein size 409 a.a.{{cite web | url = http://useast.ensembl.org/Homo_sapiens/Gene/Family?db=core;g=ENSG00000155792;r=8:119873717-120050913 | title = Homo sapiens - Ensembl protein families - Gene: DEPTOR (ENSG00000155792) | format = | work = Ensembl genome browser 78 }} Human DEPTOR contains two N-terminal DEP domains and a C-terminal PDZ domain.{{cite journal | vauthors = Peterson TR, Laplante M, Thoreen CC, Sancak Y, Kang SA, Kuehl WM, Gray NS, Sabatini DM | title = DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival | journal = Cell | volume = 137 | issue = 5 | pages = 873–86 | date = May 2009 | pmid = 19446321 | doi = 10.1016/j.cell.2009.03.046 | pmc=2758791}}
Function
DEPTOR is involved in mTOR signaling pathway as an endogenous regulator. A direct interaction between DEPTOR and mTOR has been shown. Overexpression of DEPTOR downregulates the activity of mTORC1 and mTORC2 in vitro. mTORC1 and mTORC2 can both inhibit DEPTOR through phosphorylation.
Metabolism
DEPTOR cell-autonomously regulates adipogenesis.{{cite journal | vauthors = Laplante M, Horvat S, Festuccia WT, Birsoy K, Prevorsek Z, Efeyan A, Sabatini DM | title = DEPTOR cell-autonomously promotes adipogenesis, and its expression is associated with obesity | language = English | journal = Cell Metabolism | volume = 16 | issue = 2 | pages = 202–12 | date = Aug 2012 | pmid = 22883231 | pmc = 3463374 | doi = 10.1016/j.cmet.2012.07.008 }} In the muscle, Baf60c promotes a switch from oxidative to glycolytic myofiber type through DEPTOR-mediated Akt/PKB activation.{{cite journal | vauthors = Meng ZX, Li S, Wang L, Ko HJ, Lee Y, Jung DY, Okutsu M, Yan Z, Kim JK, Lin JD | title = Baf60c drives glycolytic metabolism in the muscle and improves systemic glucose homeostasis through Deptor-mediated Akt activation | journal = Nature Medicine | volume = 19 | issue = 5 | pages = 640–5 | date = May 2013 | pmid = 23563706 | pmc = 3650110 | doi = 10.1038/nm.3144 }} Within the brain, DEPTOR is highly expressed in the hippocampus, the medio-basal hypothalamus and the circumventricular organs.{{cite journal | vauthors = Caron A, Baraboi ED, Laplante M, Richard D | title = DEP domain-containing mTOR-interacting protein in the rat brain: distribution of expression and potential implication | language = en | journal = The Journal of Comparative Neurology | volume = 523 | issue = 1 | pages = 93–107 | date = Jan 2015 | pmid = 25159114 | doi = 10.1002/cne.23668 | s2cid = 205683672 | doi-access = free }} Overexpression of DEPTOR in the medio-basal hypothalamus protects mice against high-fat diet-induced obesity by modulating Akt/PKB signaling.{{Cite journal|title = Mediobasal Hypothalamic Overexpression of Deptor Protects Against High-Fat Diet-Induced Obesity|journal = Molecular Metabolism|doi = 10.1016/j.molmet.2015.11.005|pmid = 26909318|pmc = 4735664|first1 = Alexandre|last1 = Caron|first2 = Sébastien M.|last2 = Labbé|first3 = Damien|last3 = Lanfray|first4 = Pierre-Gilles|last4 = Blanchard|first5 = Romain|last5 = Villot|first6 = Christian|last6 = Roy|first7 = David M.|last7 = Sabatini|first8 = Denis|last8 = Richard|first9 = Mathieu|last9 = Laplante|volume=5|issue = 2|pages=102–112|year = 2016}}
Clinical cancer
Although in most cancer, mTOR pathway is constitutively activated and the expression of DEPTOR is low, one study has found that DEPTOR is overexpressed in multiple myeloma cells and is necessary for their survival.
References
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Further reading
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- {{cite journal | vauthors = Maruyama K, Sugano S | title = Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides | journal = Gene | volume = 138 | issue = 1–2 | pages = 171–4 | date = Jan 1994 | pmid = 8125298 | doi = 10.1016/0378-1119(94)90802-8 }}
- {{cite journal | vauthors = Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S | title = Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library | journal = Gene | volume = 200 | issue = 1–2 | pages = 149–56 | date = Oct 1997 | pmid = 9373149 | doi = 10.1016/S0378-1119(97)00411-3 }}
- {{cite journal | vauthors = Hartley JL, Temple GF, Brasch MA | title = DNA cloning using in vitro site-specific recombination | journal = Genome Research | volume = 10 | issue = 11 | pages = 1788–95 | date = Nov 2000 | pmid = 11076863 | pmc = 310948 | doi = 10.1101/gr.143000 }}
- {{cite journal | vauthors = Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A | title = Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs | journal = Genome Research | volume = 11 | issue = 3 | pages = 422–35 | date = Mar 2001 | pmid = 11230166 | pmc = 311072 | doi = 10.1101/gr.GR1547R }}
- {{cite journal | vauthors = Simpson JC, Wellenreuther R, Poustka A, Pepperkok R, Wiemann S | title = Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing | journal = EMBO Reports | volume = 1 | issue = 3 | pages = 287–92 | date = Sep 2000 | pmid = 11256614 | pmc = 1083732 | doi = 10.1093/embo-reports/kvd058 }}
- {{cite journal | vauthors = Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A | title = From ORFeome to biology: a functional genomics pipeline | journal = Genome Research | volume = 14 | issue = 10B | pages = 2136–44 | date = Oct 2004 | pmid = 15489336 | pmc = 528930 | doi = 10.1101/gr.2576704 }}
- {{cite journal | vauthors = Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S | title = The LIFEdb database in 2006 | journal = Nucleic Acids Research | volume = 34 | issue = Database issue | pages = D415–8 | date = Jan 2006 | pmid = 16381901 | pmc = 1347501 | doi = 10.1093/nar/gkj139 }}
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