Database of protein conformational diversity
{{infobox biodatabase
|title = PCDB
|logo =File:Database.png
|description = Protein conformational diversity.
|scope =
|organism =
|center =Universidad Nacional de Quilmes
|laboratory = Centro de Estudios e Investigaciones
|author = Ezequiel I Juritz
|citation = Juritz & al. (2011)
|released = 2010
|standard =
|format =
|url = http://www.pcdb.unq.edu.ar
|download =
|webservice =
|sql =
|sparql =
|webapp =
|standalone =
|license =
|versioning =
|frequency =
|curation =
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The Database of protein conformational diversity (PCDB) is a database of diversity of protein tertiary structures within protein domains as determined by X-ray crystallography.{{cite journal |vauthors=Juritz EI, Alberti SF, Parisi GD | title = PCDB: a database of protein conformational diversity | journal = Nucleic Acids Res. | volume = 39 | issue = Database issue | pages = D475–9 |date=January 2011 | pmid = 21097895 | pmc = 3013735 | doi = 10.1093/nar/gkq1181 }}{{cite journal |vauthors=Galperin MY, Cochrane GR | title = The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection | journal = Nucleic Acids Res. | volume = 39 | issue = Database issue | pages = D1–6 |date=January 2011 | pmid = 21177655 | pmc = 3013748 | doi = 10.1093/nar/gkq1243 }} Proteins are inherently flexible and this database collects information on this subject for use in molecular research. It uses the CATH database as a source of structures for each protein and reports the range of differences in the structures based on their superposition and reports a maximum RMSD. The interface for the database allows researchers to find proteins with a range of conformational flexibility allowing them to find highly flexible proteins for example. The database is run and maintained by a group of researchers based at the Universidad Nacional de Quilmes in Argentina.{{cn|date=November 2023}}
See also
References
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External links
- {{cite web|url=http://74.54.147.134/~ezepcdb3/ |title=Protein Conformational Database |author1=Juritz, Ezequiel Iván |author2=Fernández Alberti, Sebastián |author3=Parisi, Gustavo Danie |publisher=Structural Bioinformatics Group; National University of Quilmes |accessdate=2011-08-19 |url-status=dead |archiveurl=https://web.archive.org/web/20120330231747/http://74.54.147.134/~ezepcdb3/ |archivedate=2012-03-30 }}
Category:Crystallographic databases
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