Edaphobacter
{{Short description|Genus of bacterium}}
{{Automatic taxobox
| image =
| image_caption =
| taxon = Edaphobacter
| authority = Koch et al. 2008
| type_species = Edaphobacter modestus
| type_species_authority = {{small|Koch et al. 2008}}
| subdivision_ranks = Species
| subdivision =
- E. acidisoli
- E. aggregans
- E. bradus
- E. dinghuensis
- E. flagellatus
- E. lichenicola
- E. modestus
- E. paludis
}}
Edaphobacter is a genus of Gram-negative, rod shaped bacteria.{{cite journal|last=Koch|first=I. H.|author2=Gich, F. |author3=Dunfield, P. F. |author4= Overmann, J. |title=Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils|journal=International Journal of Systematic and Evolutionary Microbiology|date=1 May 2008|volume=58|issue=5|pages=1114–1122|doi=10.1099/ijs.0.65303-0 |pmid=18450699|doi-access=free}} It contains seven species:
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web| author=Parte| url=https://lpsn.dsmz.de/genus/edaphobacter| title=Edaphobacter | access-date=2022-09-09| publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)| display-authors=et al.}} and National Center for Biotechnology Information (NCBI){{cite web| author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=388463&lvl=3&lin=f&keep=1&srchmode=1&unlock| title=Edaphobacter | access-date=2022-09-09| publisher=National Center for Biotechnology Information (NCBI) taxonomy database| display-authors=et al.}}
| class="wikitable" |
| colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}
! colspan=1 | 120 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}} |
|---|
| style="vertical-align:top|
{{Clade | style=font-size:90%;line-height:80% |1={{clade |1={{clade |label1=Edaphobacter |1={{clade |1=E. acidisoli {{small|Xia et al. 2017}} |2={{clade |1=E. bradus {{small|Xia et al. 2018}} |2={{clade |1=E. modestus {{small|Koch et al. 2008}} |2={{clade |1=E. aggregans {{small|Koch et al. 2008}} |2=E. flagellatus {{small|Xia et al. 2018}} }} }} }} }} }} |2={{clade |1=Edaphobacter dinghuensis {{small|Wang et al. 2016}} |2={{clade |1=Tunturiibacter lichenicola {{small|corrig. (Belova et al. 2018) Messyasz et al. 2024}} |2=Granulicella species-group 2 }} }} }} }} | {{Clade | style=font-size:90%;line-height:80% |1={{clade |1=Granulicella species-group 2 |2={{clade |1=Granulicella aggregans {{small|Pankratov & Dedysh 2010}} |2={{clade |1=Granulicella arctica {{small|Mannisto et al. 2012}} |2={{clade |label1=Edaphobacter |1={{clade |1=E. lichenicola {{small|Belova et al. 2018}} |2={{clade |1=E. dinghuensis {{small|Wang et al. 2016}} |2={{clade |1=E. acidisoli {{small|Xia et al. 2017}} |2={{clade |1=E. bradus {{small|Xia et al. 2018}} |2={{clade |1=E. modestus {{small|Koch et al. 2008}} |2={{clade |1=E. aggregans {{small|Koch et al. 2008}} |2=E. flagellatus {{small|Xia et al. 2018}} }} }} }} }} }} }} }} }} }} }} }} |
See also
References
{{Reflist}}
{{Bacteria classification}}
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