Human coronavirus 229E

{{Short description|Species of virus}}

{{Virusbox

| name = Human coronavirus 229E

| image = Human coronavirus 229E.png

| image_alt =

| image_caption = Transmission electron micrograph of human coronavirus 229E

| parent = Duvinacovirus

| species = Alphacoronavirus chicagoense

| synonyms = * Human coronavirus 229E

  • HCoV-229E

| synonyms_ref =

}}

Human coronavirus 229E (HCoV-229E, Alphacoronavirus chicagoense){{Cite web |title=Taxon Details {{!}} ICTV |url=https://ictv.global/taxonomy/taxondetails?taxnode_id=202301852&taxon_name=Alphacoronavirus%20chicagoense |access-date=25 July 2024 |website=International Committee on Taxonomy of Viruses (ICTV)}} is a species of coronavirus which infects humans and bats.{{Cite journal|last1=Lim|first1=Yvonne Xinyi|last2=Ng|first2=Yan Ling|last3=Tam|first3=James P.|last4=Liu|first4=Ding Xiang|date=2016-07-25|title=Human Coronaviruses: A Review of Virus–Host Interactions|journal=Diseases|volume=4|issue=3|pages=26|doi=10.3390/diseases4030026|issn=2079-9721|pmc=5456285|pmid=28933406|quote=See Table 1.|doi-access=free}} It is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the APN receptor.{{cite book|vauthors=Fehr AR, Perlman S|chapter=Coronaviruses: An Overview of Their Replication and Pathogenesis |title=Coronaviruses|date=2015|series=Methods in Molecular Biology|publisher=Springer|volume=1282|pages=1–23|doi=10.1007/978-1-4939-2438-7_1|isbn=978-1-4939-2438-7|pmc=4369385|pmid=25720466|quote=See Table 1.|veditors=Maier HJ, Bickerton E, Britton P}} Along with Human coronavirus OC43 (a member of the Betacoronavirus genus), it is one of the viruses responsible for the common cold.{{cite journal | pmid = 21849456 | year = 2011 | last1 = Lau | first1 = S. K. | last2 = Lee | first2 = P. | last3 = Tsang | first3 = A. K. | last4 = Yip | first4 = C. C. | last5 = Tse | first5 = H. | last6 = Lee | first6 = R. A. | last7 = So | first7 = L. Y. | last8 = Lau | first8 = Y. L. | last9 = Chan | first9 = K. H. | last10 = Woo | first10 = P. C. | last11 = Yuen | first11 = K. Y. | title = Molecular epidemiology of human coronavirus OC43 reveals evolution of different genotypes over time and recent emergence of a novel genotype due to natural recombination | journal = Journal of Virology | volume = 85 | issue = 21 | pages = 11325–11337 | doi = 10.1128/JVI.05512-11 | pmc = 3194943 }}{{cite journal | pmid = 20554810 | year = 2010 | last1 = Gaunt | first1 = E. R. | last2 = Hardie | first2 = A. | last3 = Claas | first3 = E. C. | last4 = Simmonds | first4 = P. | last5 = Templeton | first5 = K. E. | title = Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method | journal = Journal of Clinical Microbiology | volume = 48 | issue = 8 | pages = 2940–2947 | doi = 10.1128/JCM.00636-10 | pmc = 2916580 }} HCoV-229E is a member of the genus Alphacoronavirus and subgenus Duvinacovirus.{{cite web|url=https://ictv.global/taxonomy|title=Virus Taxonomy: 2018 Release|date=October 2018|website=International Committee on Taxonomy of Viruses (ICTV)|language=en|access-date=13 January 2019}}{{Cite journal|last1=Woo|first1=Patrick C. Y.|last2=Huang|first2=Yi|last3=Lau|first3=Susanna K. P.|last4=Yuen|first4=Kwok-Yung|date=2010-08-24|title=Coronavirus Genomics and Bioinformatics Analysis|journal=Viruses|volume=2|issue=8|pages=1804–1820|doi=10.3390/v2081803|issn=1999-4915|pmc=3185738|pmid=21994708|quote=Figure 2. Phylogenetic analysis of RNA-dependent RNA polymerases (Pol) of coronaviruses with complete genome sequences available. The tree was constructed by the neighbor-joining method and rooted using Breda virus polyprotein.|doi-access=free}}

Transmission

HCoV-229E transmits via droplet-respiration and fomites.

Signs and symptoms

HCoV-229E is associated with a range of respiratory symptoms, ranging from the common cold to high-morbidity outcomes such as pneumonia and bronchiolitis. However, such high morbidity outcomes are almost always seen in cases with co-infection with other respiratory pathogens; there is a single published case report to date of a 229E infection that caused acute respiratory distress syndrome (ARDS) in an otherwise healthy patient having no detectable co-infection with another pathogen.{{cite journal | pmid = 29850307 | year = 2018 | last1 = Vassilara | first1 = F. | last2 = Spyridaki | first2 = A. | last3 = Pothitos | first3 = G. | last4 = Deliveliotou | first4 = A. | last5 = Papadopoulos | first5 = A. | title = A Rare Case of Human Coronavirus 229E Associated with Acute Respiratory Distress Syndrome in a Healthy Adult | journal = Case Reports in Infectious Diseases | volume = 2018 | pages = 1–4 | doi = 10.1155/2018/6796839 | pmc = 5925015 | doi-access = free }} HCoV-229E is also among the coronaviruses most frequently codetected with other respiratory viruses, particularly with human respiratory syncytial virus (HRSV).{{cite journal | pmid = 13130404 | year = 2003 | last1 = Pene | first1 = F. | last2 = Merlat | first2 = A. | last3 = Vabret | first3 = A. | last4 = Rozenberg | first4 = F. | last5 = Buzyn | first5 = A. | last6 = Dreyfus | first6 = F. | last7 = Cariou | first7 = A. | last8 = Freymuth | first8 = F. | last9 = Lebon | first9 = P. | title = Coronavirus 229E-related pneumonia in immunocompromised patients | journal = Clinical Infectious Diseases | volume = 37 | issue = 7 | pages = 929–932 | doi = 10.1086/377612 | pmc = 7107892 }}{{cite journal | pmid = 12684910 | year = 2003 | last1 = Vabret | first1 = A. | last2 = Mourez | first2 = T. | last3 = Gouarin | first3 = S. | last4 = Petitjean | first4 = J. | last5 = Freymuth | first5 = F. | title = An outbreak of coronavirus OC43 respiratory infection in Normandy, France | journal = Clinical Infectious Diseases | volume = 36 | issue = 8 | pages = 985–989 | doi = 10.1086/374222 | pmc = 7109673 }}{{cite journal | pmid = 16267760 | year = 2005 | last1 = Woo | first1 = P. C. | last2 = Lau | first2 = S. K. | last3 = Tsoi | first3 = H. W. | last4 = Huang | first4 = Y. | last5 = Poon | first5 = R. W. | last6 = Chu | first6 = C. M. | last7 = Lee | first7 = R. A. | last8 = Luk | first8 = W. K. | last9 = Wong | first9 = G. K. | last10 = Wong | first10 = B. H. | last11 = Cheng | first11 = V. C. | last12 = Tang | first12 = B. S. | last13 = Wu | first13 = A. K. | last14 = Yung | first14 = R. W. | last15 = Chen | first15 = H. | last16 = Guan | first16 = Y. | last17 = Chan | first17 = K. H. | last18 = Yuen | first18 = K. Y. | title = Clinical and molecular epidemiological features of coronavirus HKU1-associated community-acquired pneumonia | journal = The Journal of Infectious Diseases | volume = 192 | issue = 11 | pages = 1898–2707 | doi = 10.1086/497151 | pmc = 7110183 }}

Epidemiology

HCoV-229E is one of the seven human coronaviruses which include HCoV-NL63, HCoV-OC43, HCoV-HKU1,

MERS-CoV, SARS-CoV-1, and SARS-CoV-2 and are globally distributed.Fields, B. N., D. M. Knipe, and P. M. Howley (ed.). 1996. Fields virology, 3rd ed. Lippincott-Raven, Philadelphia, PA.{{cite journal | pmid = 16911043 | year = 2006 | last1 = Van Der Hoek | first1 = L. | last2 = Pyrc | first2 = K. | last3 = Berkhout | first3 = B. | title = Human coronavirus NL63, a new respiratory virus | journal = FEMS Microbiology Reviews | volume = 30 | issue = 5 | pages = 760–773 | doi = 10.1111/j.1574-6976.2006.00032.x | pmc = 7109777 }} However, the viruses were detected in different parts of the world at different times of the year.{{cite journal | pmid = 16704837 | year = 2006 | last1 = Esper | first1 = F. | last2 = Weibel | first2 = C. | last3 = Ferguson | first3 = D. | last4 = Landry | first4 = M. L. | last5 = Kahn | first5 = J. S. | title = Coronavirus HKU1 infection in the United States | journal = Emerging Infectious Diseases | volume = 12 | issue = 5 | pages = 775–779 | doi = 10.3201/eid1205.051316 | pmc = 3374449 }}{{cite journal | pmid = 17222582 | year = 2007 | last1 = Gerna | first1 = G. | last2 = Percivalle | first2 = E. | last3 = Sarasini | first3 = A. | last4 = Campanini | first4 = G. | last5 = Piralla | first5 = A. | last6 = Rovida | first6 = F. | last7 = Genini | first7 = E. | last8 = Marchi | first8 = A. | last9 = Baldanti | first9 = F. | title = Human respiratory coronavirus HKU1 versus other coronavirus infections in Italian hospitalised patients | journal = Journal of Clinical Virology | volume = 38 | issue = 3 | pages = 244–250 | doi = 10.1016/j.jcv.2006.12.008 | pmc = 7108341 }}{{cite journal | pmid = 5556222 | year = 1971 | last1 = Kaye | first1 = H. S. | last2 = Marsh | first2 = H. B. | last3 = Dowdle | first3 = W. R. | title = Seroepidemiologic survey of coronavirus (Strain OC 43) related infections in a children's population | journal = American Journal of Epidemiology | volume = 94 | issue = 1 | pages = 43–49 | doi = 10.1093/oxfordjournals.aje.a121293 | pmc = 7109649 }} A NCBI-study found a previous HCoV-229E infection in 42.9% – 50.0% of children of 6–12 months of age and in 65% of those 2.5–3.5 years of age.{{cite journal | pmid = 20113545 | year = 2010 | last1 = Principi | first1 = N. | last2 = Bosis | first2 = S. | last3 = Esposito | first3 = S. | title = Effects of coronavirus infections in children | journal = Emerging Infectious Diseases | volume = 16 | issue = 2 | pages = 183–188 | doi = 10.3201/eid1602.090469 | pmc = 2957994 }}

Virology

HCoV-229E is one of seven known coronaviruses to infect humans. The other six are:{{cite web |last1=Leung |first1=Daniel |title=Coronaviruses (including SARS) |url=https://www.infectiousdiseaseadvisor.com/home/decision-support-in-medicine/infectious-diseases/coronaviruses-including-sars/ |website=Infectious Disease Advisor |date=20 January 2019 |publisher=Decision Support in Medicine, LLC |access-date=1 August 2020 |archive-date=16 April 2021 |archive-url=https://web.archive.org/web/20210416193956/https://www.infectiousdiseaseadvisor.com/home/decision-support-in-medicine/infectious-diseases/coronaviruses-including-sars/ |url-status=dead }}

Research

{{missing information|section|alpaca virus relative, also derived from bat|date=October 2021}}

Chloroquine, a zinc ionophore, inhibits the replication of Human coronavirus 229E in cell culture.{{cite journal |last1=de Wilde |first1=Adriaan H. |last2=Jochmans |first2=Dirk |last3=Posthuma |first3=Clara C. |last4=Zevenhoven-Dobbe |first4=Jessika C. |last5=van Nieuwkoop |first5=Stefan |last6=Bestebroer |first6=Theo M. |last7=van den Hoogen |first7=Bernadette G. |last8=Neyts |first8=Johan |last9=Snijder |first9=Eric J. |title=Screening of an FDA-Approved Compound Library Identifies Four Small-Molecule Inhibitors of Middle East Respiratory Syndrome Coronavirus Replication in Cell Culture |journal=Antimicrobial Agents and Chemotherapy |date=August 2014 |volume=58 |issue=8 |pages=4875–4884 |doi=10.1128/AAC.03011-14|pmid=24841269 |pmc=4136071 |doi-access=free }}

Human HCoV-229E, and human HCoV-NL63, likely originated from bats.{{cite journal | pmid = 28077633 | year = 2017 | last1 = Tao | first1 = Y. | last2 = Shi | first2 = M. | last3 = Chommanard | first3 = C. | last4 = Queen | first4 = K. | last5 = Zhang | first5 = J. | last6 = Markotter | first6 = W. | last7 = Kuzmin | first7 = I. V. | last8 = Holmes | first8 = E. C. | last9 = Tong | first9 = S. | title = Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History | journal = Journal of Virology | volume = 91 | issue = 5 | doi = 10.1128/JVI.01953-16 | pmc = 5309958 }}

History

A researcher at the University of Chicago, Dorothy Hamre, first identified 229E in 1965.{{Cite web|title=The Secret History Of The First Coronavirus|url=https://www.forbes.com/sites/alexknapp/2020/04/11/the-secret-history-of-the-first-coronavirus-229e/|last=Knapp|first=Alex|website=Forbes|language=en|access-date=2020-05-06}}{{Cite journal|last1=Hamre|first1=D.|last2=Procknow|first2=J. J.|date=1966-01-01|title=A New Virus Isolated from the Human Respiratory Tract.|url=http://ebm.sagepub.com/lookup/doi/10.3181/00379727-121-30734|journal=Experimental Biology and Medicine|language=en|volume=121|issue=1|pages=190–193|doi=10.3181/00379727-121-30734|pmid=4285768|s2cid=1314901|issn=1535-3702|url-access=subscription}}

In 2021 the International Committee on Taxonomy of Viruses (ICTV) approved a new system of naming viruses, by using binomial names.{{Cite web |title=Binomial nomenclature for virus species (continued) |url=https://gd.eppo.int/reporting/article-7659#:~:text=In%202021%2C%20the%20International%20Committee,is%20now%20called%20emaravirus%20rosae. |access-date=25 July 2024 |website=EPPO Global Database}} In 2024, the species that HCoV-229E is assigned to was renamed Alphacoronavirus chicagoense.{{cite web|title=History of the taxon: Species: Alphacoronavirus chicagoense (2024 Release, MSL #40)|url=https://ictv.global/taxonomy/taxondetails?taxnode_id=202401852&taxon_name=Alphacoronavirus%20chicagoense|publisher=International Committee on Taxonomy of Viruses|access-date=4 April 2025}}

See also

References

{{Reflist|2}}