Inparanoid

Inparanoid is an algorithm that finds orthologous genes and paralogous genes that arose—most likely by duplication—after some speciation event. Such protein-coding genes are called in-paralogs, as opposed to out-paralogs (which arose prior to a species split).{{Cite journal

| doi = 10.1006/jmbi.2000.5197

| year = 2001

| volume = 314

| issue = 5

| pages = 1041–1052

| last = Remm

| first = Maido

|author2=Christian E.V. Storm |author3=Erik L.L. Sonnhammer

| title = Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

| journal = Journal of Molecular Biology

| pmid = 11743721

| citeseerx = 10.1.1.328.6724

}}

Inparanoid (with varying capitalization) may refer to a program that uses the INPARANOID algorithm, or to the derived database of orthologous clusters of genes.{{cite journal

| author = O'Brien, K.P. |author2=Remm, M. |author3=Sonnhammer, E.L.L.

| year = 2005

| title = Inparanoid: a comprehensive database of eukaryotic orthologs

| journal = Nucleic Acids Research

| volume = 33

| issue = Database Issue

| pages = D476–80

| url= | doi = 10.1093/nar/gki107

| pmid = 15608241

| pmc = 540061

}}