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List of functional connectivity software

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Functional connectivity software is used to study functional properties of the connectome using functional Magnetic Resonance Imaging (fMRI) data in the resting state and during tasks. To access many of these software applications visit the NIH funded Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) site.

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NameDescriptionProgramming languageIs part of / requiresDeveloper/Organization
CONN{{cite journal | last1 = Whitfield-Gabrieli | first1 = S. | last2 = Nieto-Castanon | first2 = A. | year = 2012 | title = Conn: a functional connectivity toolbox for correlated and anticorrelated brainnetworks | journal = Brain Connect | volume = 2 | issue = 3| pages = 125–141 | doi=10.1089/brain.2012.0073| pmid = 22642651 }}Functional connectivity analysis and display toolMatlabSPMMcGovern Institute for Brain Research, Massachusetts Institute of Technology: MIT
DCM{{cite journal | last1 = Friston | first1 = K. J. | last2 = Kahan | first2 = J. | last3 = Biswal | first3 = B. | last4 = Razi | first4 = A. | year = 2014 | title = A DCM for resting state fMRI | journal = NeuroImage | volume = 94 | issue = 100 | pages = 396–407 | doi=10.1016/j.neuroimage.2013.12.009| pmid = 24345387 | pmc = 4073651 }}Dynamic Causal Modelling analysisMatlabSPMWellcome Trust Centre for Neuroimaging, University College London
FATCAT{{cite journal | last1 = Taylor | first1 = P. A. | last2 = Saad | first2 = Z. S. | year = 2013 | title = FATCAT: (an efficient) Functional and Tractographic Connectivity Analysis Toolbox | journal = Brain Connect | volume = 3 | issue = 5| pages = 523–535 | doi=10.1089/brain.2013.0154| pmid = 23980912 | pmc = 3796333 }}Functional and tractographic connectivity analysisCAFNIScientific and Statistical Computing Core, National Institute of Mental Health: NIMH
FSFC{{cite journal | last1 = Fischl | first1 = B. FreeSurfer | year = 2012 | title = FreeSurfer| doi = 10.1016/j.neuroimage.2012.01.021 | pmid = 22248573 | journal = NeuroImage | volume = 62 | issue = 2| pages = 774–781 | pmc = 3685476 }}Seed-based functional connectivity analysisShellFreeSurferMartinos Center for Biomedical Imaging
MELODIC{{cite journal | last1 = Beckmann | first1 = C. F. | last2 = DeLuca | first2 = M. | last3 = Devlin | first3 = J. T. | last4 = Smith | first4 = S. M. | year = 2005 | title = Investigations into resting-state connectivity using independentcomponent analysis | journal = Philos. Trans. R. Soc. Lond. B Biol. Sci.| volume = 360 | issue = 1457| pages = 1001–1013 | doi=10.1098/rstb.2005.1634| pmid = 16087444 | pmc = 1854918 }}Independent component analysisCFSLFunctional Magnetic Resonance Imaging of the Brain Analysis Group, Oxford University

See also

References

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Category:Neuroimaging software

Category:Lists of software