Methanococcus

{{Short description|Genus of archaea}}

{{Automatic_taxobox

| taxon = Methanococcus

| authority = Kluyver and van Niel 1936

| type_species = Methanococcus vannielii

| type_species_authority = Stadtman & Barker 1951

| subdivision_ranks = Species

| subdivision =

}}

Methanococcus is a genus of coccoid methanogens of the family Methanococcaceae.See the NCBI [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2184 webpage on Methanococcus]. Data extracted from the {{cite web | url=http://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=National Center for Biotechnology Information |access-date=2007-03-19}} They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a "white smoker" chimney at 21°N on the East Pacific Rise{{cite journal|author=W.J. Jones |display-authors=etal|date=December 1983|title=Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent|journal=Arch. Microbiol.|volume=136|issue=4|pages=254–261|doi=10.1007/BF00425213|s2cid=33277659}} and it was the first archaeal genome to be completely sequenced, revealing many novel and eukaryote-like elements.{{cite journal|author=C.J. Bult |display-authors=etal|date=August 1996|title=Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii|journal=Science|volume=273|issue=5278|pages=1058–1073|doi=10.1126/science.273.5278.1058|pmid=8688087|bibcode=1996Sci...273.1058B|s2cid=41481616}}

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) {{cite web|author=J.P. Euzéby |url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota |title=Methanococcales |access-date=2011-11-17 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN) |url-status=dead |archive-url=https://web.archive.org/web/20130127030659/http://www.bacterio.cict.fr/classifphyla.html |archive-date=2013-01-27 }} and National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=183939&lvl=5&lin |title=Methanococcales |access-date=2011-06-05 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database}}

class="wikitable"
colspan=1 | 16S rRNA based LTP_06_2022{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}

! colspan=1 | 53 marker proteins based GTDB 08-RS214{{cite web |title=GTDB release 08-RS214 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2023}}{{cite web |title=ar53_r214.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release214/214.0/auxillary_files/ar53_r214.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2023}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2023}}

style="vertical-align:top|

{{Clade|style=font-size:90%; line-height:90%

|1={{clade

|1={{clade

|label1=Methanocaldococcaceae

|1=Methanocaldococcus

}}

|2={{clade

|1=Methanotorris

|label2=Methanococcaceae

|2={{clade

|1=Methanofervidicoccus

|2={{clade

|1=Methanothermococcus thermolithotrophicus (type species)

|2={{clade

|1={{clade

|1=Methanothermococcus okinawensis

|2=Methanococcus aeolicus Kendall et al. 2006

}}

|2={{clade

|label1=Methanococcus

|1={{clade

|1=M. maripaludis Jones et al. 1984

|2={{clade

|1=M. vannielii Stadtman and Barker 1951 (type sp.)

|2=M. voltae Balch et al. 1981 emend. Ward et al. 1989

}}

}}

}}

}}

}}

}}

}}

}}

}}

|

{{Clade|style=font-size:90%; line-height:90%

|label1=Methanococcaceae

|1={{clade

|1=Methanotorris

|2={{clade

|1={{clade

|1=Methanofervidicoccus abyssi

|2={{clade

|1=Methanothermococcus okinawensis

|2=Methanococcus aeolicus

}}

}}

|2={{clade

|1=Methanothermococcus thermolithotrophicus

|2={{clade

|label1=Methanococcus

|1={{clade

|1=M. voltae

|2={{clade

|1=M. maripaludis

|2=M. vannielii

}}

}}

}}

}}

}}

}}

}}

See also

References

{{Reflist}}

Further reading

  • {{ cite journal | author = Judicial Commission of the International Committee on Systematics of Prokaryotes | date = 2005 | title = The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobacterium, Methanobacterium, Methanococcus, Methanomicrobium, Planctomyces, Prochloron, Sulfolobus, Thermococcus, Thermoproteus and Verrucomicrobium, respectively. Opinion 79 | journal = Int. J. Syst. Evol. Microbiol. | volume = 55 | pages = 517–518 | pmid = 15653928 | issue = Pt 1 | doi = 10.1099/ijs.0.63548-0| doi-access = free }}
  • {{ cite journal | doi = 10.1099/00207713-49-2-591 | author = Jeanthon C |author2=L'Haridon S |author3=Pradel N |author4=Prieur D | date = 1999 | title = Rapid identification of hyperthermophilic methanococci isolated from deep-sea hydrothermal vents | journal = Int. J. Syst. Bacteriol. | volume = 49 | issue = 2 | pages = 591–594 | pmid = 10319480| doi-access = free }}
  • {{ cite journal | doi = 10.1099/00207713-46-3-727 | author = Keswani J |author2=Orkand S |author3=Premachandran U |author4=Mandelco L |display-authors=4 |author5=Franklin MJ |author6=Whitman WB | date = 1996 | title = Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods | journal = Int. J. Syst. Bacteriol. | volume = 46 | pages = 727–735 | pmid = 8782682 | issue = 3| doi-access =free }}
  • {{ cite journal | doi = 10.1099/00207713-36-2-357 | last = Wayne | first = LG | date = 1986 | title = Actions of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinions published in 1983 and 1984 | journal = Int. J. Syst. Bacteriol. | volume = 36 | issue = 2 | pages = 357–358 | doi-access = free }}
  • {{ cite journal | doi = 10.1099/00207713-36-3-491 | author = Judicial Commission of the International Committee on Systematics of Prokaryotes | date = 1986 | title = Transfer of the type species of the genus Methanococcus to the genus Methanosarcina as Methanosarcina mazei (Barker 1936) comb. nov. et emend. Mah and Kuhn 1984 and conservation of the genus Methanococcus (Approved Lists, 1980) emend. Mah and Kuhn 1984 with Methanococcus vannielii (Approved Lists, 1980) as the type species | journal = Int. J. Syst. Bacteriol. | volume = 36 | pages = 491 | doi-access = free }}
  • {{ cite journal | doi = 10.1099/00207713-34-2-263 | author = Mah RA |author2=Kuhn DA | date = 1984 | title = Transfer of the type species of the genus Methanococcus to the genus Methanosarcina naming it Methanosarcina mazei (Barker 1936) comb. nov. et emend. and conservation of the genus Methanococcus (Approved Lists, 1980) with Methanococcus vannielii (Approved Lists, 1980) as the type species. Request for an opinion | journal = Int. J. Syst. Bacteriol. | volume = 34 | issue = 2 | pages = 263–265 | doi-access = free }}
  • {{ cite journal | author = Balch WE |author2=Fox GE |author3=Magrum LJ |author4=Woses CR |display-authors=4 |author5=Wolfe RS | date = 1979 | title = Methanogens: reevaluation of a unique biological group | journal = Microbiol. Rev. | volume = 43 | pages = 260–296 | pmid = 390357 | issue = 2 | pmc = 281474 | doi = 10.1128/MMBR.43.2.260-296.1979}}
  • {{cite journal|last1=Allen|first1=Kylie|last2=Wegener|first2=Gunter|last3=White|first3=Robert|title=Discovery of Multiple Modified F430 Coenzymes in Methanogens and Anaerobic Methanotrophic Archaea Suggests Possible New Roles for F430 in Nature|journal=Applied and Environmental Microbiology|date=8 August 2014|volume=80|issue=20|pages=6403–6412|doi=10.1128/AEM.02202-14|pmid=25107965|pmc=4178637|bibcode=2014ApEnM..80.6403A}}
  • {{ cite journal | author = Kluyver AJ |author2=van Niel CB | date = 1936 | title = Prospects for a natural system of classification of bacteria | journal = Zentralbl. Bakterol. Parasitenkd. Infectinskr. Hyg., Abt. II | volume = 94 | pages = 369–403 }}

{{Archaea classification}}

{{Extremophile}}

{{Taxonbar|from=Q2711364}}

Category:Archaea genera

Category:Euryarchaeota

{{Euryarchaeota-stub}}