MochiView
{{primary sources|date=August 2016}}
MochiView (Motif and ChIP Viewer) Homann OR and Johnson AD. MochiView: versatile software for genome browsing and DNA Motif analysis. BMC Biology. 2010, 8:49 [http://www.biomedcentral.com/1741-7007/8/49] is software that integrates a genome browser and tools for data and Sequence motif visualization and analysis. The software uses the Java language, contains a fully integrated JavaDB database, is platform-independent, and is freely available.
Description
MochiView was originally designed{{When|date=October 2022}} as a platform for rapidly browsing, visualizing, and extracting Sequence motifs from ChIP-chip and ChIP-Seq data. The software uses a generalized data format that serves other purposes as well, such as the visualization and analysis of RNA-Seq data or the import, maintenance, exploration, and analysis of Sequence motif libraries. The MochiView website[http://johnsonlab.ucsf.edu/sj/mochiview-start/ MochiView website: main page] {{webarchive|url=https://web.archive.org/web/20100813083956/http://johnsonlab.ucsf.edu/sj/mochiview-start/ |date=2010-08-13 }} contains a detailed feature list{{Cite web |url=http://johnsonlab.ucsf.edu/sj/mochiview-features/ |title=MochiView website: feature list |access-date=2010-05-12 |archive-url=https://web.archive.org/web/20100813133911/http://johnsonlab.ucsf.edu/sj/mochiview-features/ |archive-date=2010-08-13 |url-status=dead }} and demo videos{{Cite web |url=http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ |title=MochiView website: sample videos |access-date=2010-05-12 |archive-url=https://web.archive.org/web/20100813111924/http://johnsonlab.ucsf.edu/sj/mochiview-screenshots/ |archive-date=2010-08-13 |url-status=dead }} of the software showing smooth panning/zooming, data/gene/sequence/coordinate browsers, and plot interactivity. The software was created by Oliver Homann in the laboratory of Alexander Johnson at the University of California at San Francisco.
References
External links
- MochiView website [https://web.archive.org/web/20100813083956/http://johnsonlab.ucsf.edu/sj/mochiview-start/]