MolIDE
{{No footnotes|article|date=October 2011}}
Developed by the Dunbrack group at Fox Chase Cancer Center, MolIDE is an open-source cross-platform program for comparative modelling of protein structures. MolIDE acts as a graphical user interface to the common tasks involved in predicting protein structures based on known homologous structures. It implements the most frequently used steps involved in modeling: secondary structure prediction, multiple-round psiblast alignments, assisted alignment editing (integrating a template viewer and secondary structure prediction), side chain replacement and loop building.
References
- {{cite journal |pages=1832–47 |doi=10.1038/nprot.2008.184 |pmc=2682191 |title=SCWRL and MolIDE: Computer programs for side-chain conformation prediction and homology modeling |year=2008 |last1=Wang |first1=Qiang |last2=Canutescu |first2=Adrian A |last3=Dunbrack |first3=Roland L |journal=Nature Protocols |volume=3 |issue=12 |pmid=18989261}}
- {{cite journal |pages=2914–6 |doi=10.1093/bioinformatics/bti438 |title=MollDE: A homology modeling framework you can click with |year=2005 |last1=Canutescu |first1=A. A. |last2=Dunbrack |first2=R. L. |journal=Bioinformatics |volume=21 |issue=12 |pmid=15845657|doi-access=free }}