Nitrobacteraceae

{{Short description|Family of bacteria}}

{{Automatic taxobox

| taxon = Nitrobacteraceae

| authority = corrig. Buchanan 1917 (Approved Lists 1980)

| subdivision_ranks = Genera{{cite web|vauthors=Euzéby JP, Parte AC |url=https://lpsn.dsmz.de/family/nitrobacteraceae |title=Nitrobacteraceae |access-date=May 15, 2021 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)}}

| subdivision =

| synonyms =

  • Nitrobacteriaceae Buchanan 1917 (Approved Lists 1980)
  • Bradyrhizobiaceae Garrity et al. 2006

}}

The Nitrobacteraceae are a family of gram-negative, aerobic bacteria. They include plant-associated bacteria such as Bradyrhizobium, a genus of rhizobia associated with some legumes. It also contains animal-associated bacteria such as Afipia felis, formerly thought to cause cat-scratch disease. Others are free-living, such as Rhodopseudomonas, a purple bacterium found in marine water and soils. The strain Rhodopseudomonas palustris DX-1 can generate an electric current with no hydrogen production, a trait being explored in the development of the microbial fuel cell.{{cite journal |author1=Defeng Xing |author2=Yi Zuo |author3=Shaoan Cheng |author4=John M. Regan |author5=Bruce E. Logan |name-list-style=amp |year=2008 |title=Electricity Generation by Rhodopseudomonas palustris DX-1 |journal=Environ. Sci. Technol. |volume=42 |pages=4146–51 |doi=10.1021/es800312v |pmid=18589979 |issue=11 |bibcode=2008EnST...42.4146X }} The genus Afipia has also been found in the atmosphere, where it uses methylsulfonylmethane as a carbon source.{{cite journal |last1=DeLeon-Rodriguez |first1=Natasha |last2=Lathem |first2=Terry L. |last3=Rodriguez-R |first3=Luis M. |last4=Barazesh |first4=James M. |last5=Anderson |first5=Bruce E. |last6=Beyersdorf |first6=Andreas J. |last7=Ziemba |first7=Luke D. |last8=Bergin |first8=Michael |last9=Nenes |first9=Athanasios |last10=Konstantinidis |first10=Konstantinos T. |title=Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications |journal=Proceedings of the National Academy of Sciences |date=12 February 2013 |volume=110 |issue=7 |pages=2575–2580 |doi=10.1073/pnas.1212089110 |url=https://www.pnas.org/doi/10.1073/pnas.1212089110 |access-date=12 January 2024|pmc=3574924 }}

The bacteria of this family derive their energy from oxidizing ammonia to nitrite, or by oxidizing nitrite to nitrate. They are commonly found in freshwater and soil.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN). The phylogeny is based on whole-genome analysis.{{cite journal |last1=Hördt |first1=Anton |last2=López |first2=Marina García |last3=Meier-Kolthoff |first3=Jan P. |last4=Schleuning |first4=Marcel |last5=Weinhold |first5=Lisa-Maria |last6=Tindall |first6=Brian J. |last7=Gronow |first7=Sabine |last8=Kyrpides |first8=Nikos C. |last9=Woyke |first9=Tanja |last10=Göker |first10=Markus |title=Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria |journal=Frontiers in Microbiology |date=7 April 2020 |volume=11 |pages=468 |doi=10.3389/fmicb.2020.00468|pmid=32373076 |pmc=7179689 |doi-access=free }}

{{Clade | style=font-size:75%;line-height:75%

|1={{clade

|label1=Nitrobacteraceae

|1={{clade

|1=Variibacter

|2={{clade

|1={{clade

|1=Pseudorhodoplanes

|2=Pseudolabrys

}}

|2={{clade

|1=Afipia

|2={{clade

|1=Rhodopseudomonas

|2=Bradyrhizobium

}}

}}

}}

}}

|label2=outgroup

|2=Phreatobacteraceae

}}

}}

See also

References

{{Reflist|2}}