Nitrospinota
{{distinguish|Nitrospirota}}
{{Short description|Phylum of bacteria}}
{{Automatic taxobox
| taxon = Nitrospinota
| subdivision_ranks = Class
| subdivision =
| subdivision_ref = {{GBIF |id=179163009 |taxon=Nitrospinae |accessdate=5 September 2021}}
| synonyms =
- "Nitrospinota" Park et al. 2020
- "Nitrospinae" Lücker et al. 2013
}}
Nitrospinota is a bacterial phylum. Despite only few described species, members of this phylum are major nitrite-oxidizing bacteria in surface waters in oceans. By oxidation of nitrite to nitrate they are important in the process of nitrification in marine environments.{{cite journal | vauthors = Lücker S, Nowka B, Rattei T, Spieck E, Daims H | title = The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer | journal = Frontiers in Microbiology | volume = 4 | pages = 27 | date = 2013 | pmid = 23439773 | pmc = 3578206 | doi = 10.3389/fmicb.2013.00027 | doi-access = free }}
Although the genus Nitrospina is an aerobic bacterium, it was shown to oxidize nitrite also in oxygen minimum zone of the ocean. Depletion of oxygen in such zones leads to preference of anaerobic processes such as denitrification and nitrogen loss through anammox. Nitrospina thus outweigh nitrogen loss by nitrification also in these oxygen depleted zones.{{cite journal | vauthors = Beman JM, Leilei Shih J, Popp BN | title = Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean | journal = The ISME Journal | volume = 7 | issue = 11 | pages = 2192–205 | date = November 2013 | pmid = 23804152 | pmc = 3806268 | doi = 10.1038/ismej.2013.96 | bibcode = 2013ISMEJ...7.2192B }}{{cite journal | vauthors = Sun X, Kop LF, Lau MC, Frank J, Jayakumar A, Lücker S, Ward BB | title = Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones | journal = The ISME Journal | volume = 13 | issue = 10 | pages = 2391–2402 | date = October 2019 | pmid = 31118472 | pmc = 6776041 | doi = 10.1038/s41396-019-0443-7 | bibcode = 2019ISMEJ..13.2391S }}
Among the cultivated isolates within the genus Nitrospina are Nitrospina gracilis{{Cite journal|last1=Watson|first1=Stanley W.|last2=Waterbury|first2=John B.|date=1971|title=Characteristics of two marine nitrite oxidizing bacteria, Nitrospina gracilis nov. gen. nov. sp. and Nitrococcus mobilis nov. gen. nov. sp.|url=http://dx.doi.org/10.1007/bf00408114|journal=Archiv für Mikrobiologie|volume=77|issue=3|pages=203–230|doi=10.1007/bf00408114|bibcode=1971ArMic..77..203W |s2cid=35169111|issn=0302-8933|url-access=subscription}} and Nitrospina watsonii.{{Cite journal|last1=Spieck|first1=Eva|last2=Keuter|first2=Sabine|last3=Wenzel|first3=Thilo|last4=Bock|first4=Eberhard|last5=Ludwig|first5=Wolfgang|date=May 2014|title=Characterization of a new marine nitrite oxidizing bacterium, Nitrospina watsonii sp. nov., a member of the newly proposed phylum "Nitrospinae"|url=http://dx.doi.org/10.1016/j.syapm.2013.12.005|journal=Systematic and Applied Microbiology|volume=37|issue=3|pages=170–176|doi=10.1016/j.syapm.2013.12.005|pmid=24581679|bibcode=2014SyApM..37..170S |issn=0723-2020|url-access=subscription}} Further genomes were resolved by culture-independent metagenome binning. The two Nitrospina species are, however, distantly related to environmentally abundant uncultured Nitrospinota.{{Cite journal|last1=Mueller|first1=Anna J.|last2=Jung|first2=Man-Young|last3=Strachan|first3=Cameron R.|last4=Herbold|first4=Craig W.|last5=Kirkegaard|first5=Rasmus H.|last6=Wagner|first6=Michael|last7=Daims|first7=Holger|date=March 2021|title=Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting|journal=The ISME Journal|language=en|volume=15|issue=3|pages=732–745|doi=10.1038/s41396-020-00809-6|pmid=33067588|pmc=8026999|issn=1751-7362|doi-access=free|bibcode=2021ISMEJ..15..732M }} The two other strains were cultivated in 2020 each in the binary culture with alphaproteobacterial heterotroph. They are called "Candidatus Nitrohelix vancouverensis" and "Candidatus Nitronauta litoralis". "Nitrohelix vancouverensis" is closely related to uncultivated environmentally abundant Nitrospinota clades 1 and 2.
Taxonomy
{{cladogram|title=Phylogeny of Nitrospinota{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}|
{{clade|style=font-size:90%;line-height:90%;width:300px
|1={{Clade
|label1=VA-1
|1={{Clade
|1="Ca. Nitrohelix vancouverensis"
|2="Ca. Nitromaritima"
}}
|label2=Nitrospinaceae
|2={{Clade
|1="Ca. Nitronauta litoralis"
|2={{Clade
|label1=Nitrospina
|1={{Clade
|1=N. gracilis
|2="N. watsonii"
}}
}}
}}
}}
}}
}}
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) {{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/phylum/nitrospinae |title="Nitrospinae" |accessdate=2020-11-17 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)}} and National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=1293497&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Nitrospinae |accessdate=2020-11-17 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database|display-authors=etal}}
- Class Nitrospinia Lucker et al. 2022
- Order Nitrospinales Lücker et al. 2022
- Family Nitrospinaceae Garrity, Bell & Lilburn 2006
- Genus "Candidatus Nitrohelix" Mueller et al. 2021
- "Ca. N. vancouverensis" Mueller et al. 2021
- Genus "Candidatus Nitromaritima" Ngugi et al. 2016
- Genus "Candidatus Nitronauta" Mueller et al. 2021
- "Ca. N. litoralis" Mueller et al. 2021
- Genus Nitrospina Watson & Waterbury 1971
- N. gracilis Watson & Waterbury 1971
- "N. watsonii" Spieck et al. 2014
See also
References
{{Reflist}}
{{Bacteria classification}}
{{Taxonbar|from=Q26714852}}