Nocardiopsis
{{Short description|Genus of bacteria}}
{{Automatic taxobox
| taxon = Nocardiopsis
| authority = (Brocq-Rousseau 1904) Meyer 1976
| type_species = Nocardiopsis dassonvillei
| type_species_authority = (Brocq-Rousseau 1904) Meyer 1976
| subdivision_ranks = Species
| subdivision =
| synonyms =
- "Brachystreptospora"
| synonyms_ref = {{cite web|url=https://www.uniprot.org/taxonomy/2013 |title=Nocardiopsis|publisher=uniprot.org|accessdate=2016-08-18}}
}}
Nocardiopsis is a bacterial genus from the family Nocardiopsaceae which can produces some antimicrobial compounds,{{cite journal|last1=Bennur|first1=T.|last2=Ravi Kumar|first2=A.|last3=Zinjarde|first3=S.S.|last4=Javdekar|first4=V.|title=Nocardiopsis species: a potential source of bioactive compounds|journal=Journal of Applied Microbiology|date=January 2016|volume=120|issue=1|pages=1–16|doi=10.1111/jam.12950|pmid=26369300|s2cid=5266243}} including thiopeptides.{{cite journal|last1=Engelhardt|first1=K.|last2=Degnes|first2=K. F.|last3=Kemmler|first3=M.|last4=Bredholt|first4=H.|last5=Fjaervik|first5=E.|last6=Klinkenberg|first6=G.|last7=Sletta|first7=H.|last8=Ellingsen|first8=T. E.|last9=Zotchev|first9=S. B.|title=Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species|journal=Applied and Environmental Microbiology|date=18 June 2010|volume=76|issue=15|pages=4969–4976|doi=10.1128/AEM.00741-10|pmid=20562278|pmc=2916467|bibcode=2010ApEnM..76.4969E }} Nocardiopsis occur mostly in saline and alkaline soils.{{cite book|last1=(ed.)|first1=Koki Horikoshi|title=Extremophiles handbook|date=2011|publisher=Springer|location=Tokyo|isbn=978-4-431-53897-4}}
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web |author=A.C. Parte |url=https://lpsn.dsmz.de/genus/nocardiopsis |title=Nocardiopsis |access-date=2025-02-28 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN) |display-authors=et al.}} and National Center for Biotechnology Information (NCBI).{{cite web |author=C.L. Schoch |url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2013&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Nocardiopsis |access-date=2025-02-28 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database |display-authors=et al.}}
| class="wikitable" |
| colspan=1 | 16S rRNA based LTP_10_2024{{cite web |title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web |title=LTP_all tree in newick format |url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web |title=LTP_10_2024 Release Notes |url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}
! colspan=1 | 120 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database |access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database |access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database |access-date=10 May 2024}} |
|---|
| style="vertical-align:top|
{{Clade | style=font-size:90%;line-height:80% |1=Nocardiopsis trehalosi Dolak, Castle & Laborde 1981 ex Evtushenko et al. 2000 }} {{Clade | style=font-size:90%;line-height:80% |label1=Nocardiopsis~ |1={{clade |1={{clade |1=Nocardiopsis mangrovi corrig. Huang et al. 2024 |2=Nocardiopsis sediminis Muangham et al. 2016 }} |2={{clade |1={{clade |1=Nocardiopsis coralliicola Li et al. 2012 |2={{clade |1=Nocardiopsis halophila Al-Tai & Ruan 1994 |2={{clade |1=Nocardiopsis chromatogenes Li et al. 2006 |2={{clade |1=Nocardiopsis endophytica Chantavorakit et al. 2023 |2=Nocardiopsis suaedae Chantavorakit et al. 2023 }} }} }} }} |2={{clade |1={{clade |1=Nocardiopsis composta corrig. Kämpfer, Busse & Rainey 2002 |2=Nocardiopsis potens Yassin et al. 2009 }} |2={{clade |1={{clade |1=Nocardiopsis akesuensis Gao et al. 2016 |2=Nocardiopsis mwathae Akhwale et al. 2016 }} |2={{clade |1=Nocardiopsis gilva Li et al. 2006 |2={{clade |1=Nocardiopsis rhodophaea Li et al. 2006 |2=Nocardiopsis rosea Li et al. 2006 }} }} }} }} }} }} }} {{Clade | style=font-size:90%;line-height:80% |label1=Nocardiopsis |1={{clade |1=N. ansamitocini Zhang et al. 2016 |2={{clade |1={{clade |1=N. nikkonensis Yamamura et al. 2010 |2={{clade |1=N. rhizosphaerae Zhang et al. 2016 |2={{clade |1=N. salina Li et al. 2004 |2={{clade |1=N. coralli Li et al. 2021 |2={{clade |1=N. xinjiangensis Li et al. 2003 |2={{clade |1=N. kunsanensis Chun et al. 2000 |2=N. litoralis Chen et al. 2009 }} }} }} }} }} }} |2={{clade |1=N. fildesensis Xu et al. 2014 |2={{clade |1={{clade |1=N. flavescens Fang et al. 2011 |2=N. lucentensis Yassin et al. 1993 }} |2={{clade |1={{clade |1=N. algeriensis Bouras et al. 2015 |2={{clade |1=N. alba Grund & Kroppenstedt 1990 |2={{clade |1={{clade |1=N. quinghaiensis Chen et al. 2008 |2={{clade |1=N. arvandica Hamedi et al. 2011 |2=N. sinuspersici Hamedi et al. 2010 }} }} |2={{clade |1=N. halotolerans Al-Zarban et al. 2002 |2={{clade |1=N. akebiae Mo et al. 2024 |2={{clade |1={{clade |1=N. dassonvillei (Brocq-Rousseau 1904) Meyer 1976 |2=N. deserti Asem et al. 2020 }} |2={{clade |1=N. dassonvillei crassaminis Camacho Pozo et al. 2020 |2=N. synnemataformans Yassin et al. 1997 }} }} }} }} }} }} }} |2={{clade |1=N. aegyptia Sabry et al. 2004 |2={{clade |1={{clade |1=N. tropica Evtushenko et al. 2000 |2=N. umidischolae Peltola et al. 2002 }} |2={{clade |1={{clade |1=N. alkaliphila Hozzein et al. 2004 |2=N. changdeensis Mo et al. 2024 }} |2={{clade |1={{clade |1=N. eucommiae Mo et al. 2022 |2=N. prasina (Miyashita, Mikami & Arai 1984) Yassin et al. 1997 }} |2={{clade |1={{clade |1=N. terrae Chen et al. 2012 |2={{clade |1=N. listeri Grund & Kroppenstedt 1990 |2={{clade |1=N. nanhaiensis Pan et al. 2015 |2=N. oceani Pan et al. 2015 }} }} }} |2={{clade |1=N. ganjiahuensis Zhang et al. 2008 |2={{clade |1=N. metallicus Schippers et al. 2002 |2={{clade |1=N. exhalans Peltola et al. 2002 |2=N. valliformis Yang et al. 2008 }} }} }} }} }} }} }} }} }} }} }} }} }} }} | {{Clade | style=font-size:90%;line-height:80% }} {{Clade | style=font-size:90%;line-height:80% }} {{Clade | style=font-size:90%;line-height:80% |1={{clade |label1=Nocardiopsis_C |1={{clade |2=Nocardiopsis mwathae }} |label2=Nocardiopsis_A |2={{clade |1={{clade }} |2={{clade |1=Nocardiopsis halophila [Nocardiopsis baichengensis Li et al. 2006] |2={{clade |1=Nocardiopsis suaedae |2={{clade |2=Nocardiopsis endophytica }} }} }} }} }} }} {{Clade | style=font-size:90%;line-height:80% |label1=Nocardiopsis |1={{clade |1={{clade |1={{clade |1="Ca. N. merdipullorum" Gilroy et al. 2021 |2={{clade |1={{clade |1=N. coralli |2=N. salina }} |2={{clade |1=N. kunsanensis [N. litoralis] }} }} }} |2={{clade |1={{clade |1=N. alba |2={{clade |2=N. listeri }} }} |2={{clade |1=N. terrae |2={{clade |1={{clade |1=N. eucommiae |2=N. prasina }} |2={{clade |2={{clade |1=N. exhalans }} }} }} }} }} }} |2={{clade |1={{clade |1=N. aegyptia |2=N. lucentensis }} |2={{clade |1={{clade |2={{clade |1=N. changdeensis }} }} |2={{clade |1={{clade |2=N. sinuspersici [N. arvandica] }} |2={{clade |2={{clade |1=Glycomyces fuscus Han et al. 2014 |2={{clade |1=N. dassonvillei [N. deserti] |2={{clade |1=N. alborubida corrig. Grund & Kroppenstedt 1990 |2=N. synnemataformans }} }} }} }} }} }} }} }} }} |
Unassigned species:
- "N. benisuefensis" Hozzein 2003c
- "N. lambiniae" Nouioui et al. 2024
- "N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
- "N. tangguensis" Lu et al. 2002
- "N. viridoflava" Xie, Liu & Wang 2002b
- "N. yanglingensis" Yan et al. 2011
See also
References
{{Reflist}}
Further reading
- {{cite journal|last1=Li|first1=Hong-Wei|last2=Zhi|first2=Xiao-Yang|last3=Yao|first3=Ji-Cheng|last4=Zhou|first4=Yu|last5=Tang|first5=Shu-Kun|last6=Klenk|first6=Hans-Peter|last7=Zhao|first7=Jiao|last8=Li|first8=Wen-Jun|last9=Brochier-Armanet|first9=Celine|title=Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability|journal=PLOS ONE|date=23 April 2013|volume=8|issue=4|pages=e61528|doi=10.1371/journal.pone.0061528|pmid=23626695|pmc=3634020|bibcode=2013PLoSO...861528L |doi-access=free}}
- {{cite journal|last1=Zhang|first1=Haibo|last2=Saurav|first2=Kumar|last3=Yu|first3=Ziquan|last4=Mándi|first4=Attila|last5=Kurtán|first5=Tibor|last6=Li|first6=Jie|last7=Tian|first7=Xinpeng|last8=Zhang|first8=Qingbo|last9=Zhang|first9=Wenjun|last10=Zhang|first10=Changsheng|title=α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains|journal=Journal of Natural Products|date=24 June 2016|volume=79|issue=6|pages=1610–1618|doi=10.1021/acs.jnatprod.6b00175|pmid=27300427}}
- {{cite journal|last1=Pan|first1=HQ|last2=Zhang|first2=DF|last3=Li|first3=L|last4=Jiang|first4=Z|last5=Cheng|first5=J|last6=Zhang|first6=YG|last7=Wang|first7=HF|last8=Hu|first8=JC|last9=Li|first9=WJ|title=Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea.|journal=International Journal of Systematic and Evolutionary Microbiology|date=October 2015|volume=65|issue=10|pages=3384–91|doi=10.1099/ijsem.0.000425|pmid=26297579|doi-access=free}}
- {{cite journal|last1=Bennur|first1=T.|last2=Ravi Kumar|first2=A.|last3=Zinjarde|first3=S.S.|last4=Javdekar|first4=V.|title=Nocardiopsis species: a potential source of bioactive compounds|journal=Journal of Applied Microbiology|date=January 2016|volume=120|issue=1|pages=1–16|doi=10.1111/jam.12950|pmid=26369300|s2cid=5266243}}
- {{cite book|last1=Patrice|first1=Dion|last2=Chandra Shekhar|first2=Nautiyal|title=Microbiology of Extreme Soils|date=2007|publisher=Springer Science & Business Media|isbn=978-3-540-74231-9}}
- {{cite book|last1=Horikoshi|first1=Koki|title=Alkaliphiles|date=1999|publisher=Kodansha|location=Tokyo|isbn=90-5702-458-6}}
- {{cite book|last1=Atta-ur-Rahman|first1=edited by|title=Studies in Natural Products Chemistry Indices Part A.|date=1997|publisher=Elsevier|location=Burlington|isbn=0-08-048120-5}}
- {{cite book|last1=Glasby|first1=John S.|title=Dictionary of antibiotic-producing organisms|date=1992|publisher=Ellis Horwood|location=New York|isbn=0-13-210584-5|edition=1. publ.}}
- {{cite book|last1=Staley|first1=Don J. Brenner ... ed. Ed. board James T.|title=Bergey's manual of systematic bacteriology.|date=2005|publisher=Springer|location=New York|isbn=0-387-28021-9|edition=2nd}}
{{Portal bar|Biology}}
{{Bacteria classification}}
{{Taxonbar|from=Q19729591}}
{{Actinobacteria-stub}}