Pectobacterium carotovorum

{{Short description|Bacterial pathogen of several plants}}

{{Speciesbox

| image = Slime flux on Camperdown elm.png

| image_caption = Slime flux on a Camperdown elm caused by Pectobacterium carotovorum

| taxon = Pectobacterium carotovorum

| authority = (Jones 1901) Waldee 1945

| synonyms = Erwinia carotovora

| subdivision_ranks = Subspecies

| subdivision =

  • Pectobacterium carotovorum subsp. actinidiae" Koh et al. 2012
  • Pectobacterium carotovorum subsp. brasiliense" Nabhan et al. 2012
  • Pectobacterium carotovorum subsp. wasabiae (Goto and Matsumoto 1987) Hauben et al. 1999
  • Pectobacterium carotovorum subsp. atrosepticum (van Hall 1902) Hauben et al. 1999
  • Pectobacterium carotovorum subsp. carotovorum (Jones 1901) Hauben et al. 1999
  • Pectobacterium carotovorum subsp. odoriferum (Gallois et al. 1992) Hauben et al. 1999
  • Pectobacterium carotovorum subsp. betavasculorum (Thomson et al. 1984) Hauben et al. 1999

}}

File:Onion (Allium cepa)- Bacterial soft rot.jpg{{dubious |reason=If we don't know...|date=February 2023}}]]

Pectobacterium carotovorum is a bacterium of the family Pectobacteriaceae; it used to be a member of the genus Erwinia.

{{ Cite journal |

language=en|

access-date=|

year=2003|

volume=4|

issue=1|

department=Pathogen profile|

publisher=Blackwell Publishing Ltd.|

pages=17–30|

first4=Paul|

first3=Maria|

first2=Kenneth|

first1=Ian|

last4=Birch|

last3=Holeva|

last2=Bell|

last1=Toth|

title=Soft rot erwiniae: from genes to genomes|

doi=10.1046/j.1364-3703.2003.00149.x|

s2cid=37973919|

journal=Molecular Plant Pathology|

issn=1364-3703|

pmid=20569359|

id=British Society for Plant Pathology (BSPP)}}

The species is a plant pathogen with a diverse host range, including many agriculturally and scientifically important plant species. It produces pectolytic enzymes that hydrolyze pectin between individual plant cells. This causes the cells to separate, a disease plant pathologists term bacterial soft rot. Specifically, it causes beet vascular necrosis and blackleg of potato and other vegetables (hence the name carotovora – "carrot-eater"), as well as slime flux on many different tree species.{{cite journal|last=Toth|first=Ian K.|author2=Bell, Kenneth S. |author3=Holeva, Maria C. |author4=Birch, Paul R. J. |title=Soft rot erwiniae: from genes to genomes|journal=Molecular Plant Pathology|date=1 January 2003|volume=4|issue=1|pages=17–30|doi=10.1046/j.1364-3703.2003.00149.x|pmid=20569359}} Currently, there are four described subspecies of P. carotovorum ({{ Visible anchor |carotovorum|text=carotovorum}}, {{ Visible anchor |brasiliense|text=brasiliense}}, {{ Visible anchor |odoriferum|text=odoriferum}}, and {{ Visible anchor |actinidiae|text=actinidiae}}).

This review...

{{ Cite journal |year=2021|issue=4|volume=111|first2=Amy|first1=Yuan|last1=Zeng|pages=600–610|last2=Charkowski|publisher=American Phytopathological Society (APS)|issn=0031-949X|journal=Phytopathology|title=The Role of ATP-Binding Cassette Transporters in Bacterial Phytopathogenesis|doi=10.1094/phyto-06-20-0212-rvw|doi-access=free|pmid=33225831}}

...cite this study:

{{Cite journal|publisher=BMC|last1=Li|first1=Lei|last2=Yuan|first2=Lifang|last3=Shi|first3=Yanxia|last4=Xie|first4=Xuewen|last5=Chai|first5=Ali|last6=Wang|first6=Qi|last7=Li|first7=Baoju|date=2019|title=Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features|journal=BMC Genomics|language=en|volume=20|issue=1|pages=486|s2cid=255817156|id={{S2CID|189763708}}|doi=10.1186/s12864-019-5831-x|issn=1471-2164|pmc=6567464|pmid=31195968 |doi-access=free }}

This bacterium is a ubiquitous plant pathogen with a wide host range (carrot, potato, tomato, leafy greens, squash and other cucurbits, onion, green peppers, African violets, etc.), able to cause disease in almost any plant tissue it invades. It is a very economically important pathogen in terms of post-harvest losses, and a common cause of decay in stored fruits and vegetables. Decay caused by P. carotovora is often referred to as "bacterial soft rot" though this may also be caused by other bacteria. Most plants or plant parts can resist invasion by the bacteria, unless some type of wound is present. High humidity and temperatures around {{ Convert |30|C}} favor development of decay. The cells become highly motile near this temperature ({{ Convert |26 |C}}) when fructose is present.{{cite book |last=Aizawa |first=Shin-Ichi |chapter=Pectobacterium carotovorum — Subpolar Hyper-Flagellation|date=2014|pages=58–59|publisher=Elsevier|isbn=9780124172340|doi=10.1016/b978-0-12-417234-0.00018-9|title=The Flagellar World}} Mutants can be produced which are less virulent. Virulence factors include: pectinases, cellulases, (which degrade plant cell walls), and also proteases, lipases, xylanases, and nucleases (along with the normal virulence factors for pathogens – Fe acquisition, lipopolysaccharide (LPS) integrity{{ Specify |date=February 2023}}, multiple global regulatory systems).

Management

KENGAP, partners of the CABI-led programme, Plantwise have several recommendations for the management of P. carotovora including; washing hands and disinfecting tools regularly during and after harvesting, avoiding harvesting in warm and moist conditions. They also recommend frequent irrigation during head formation should be avoided to allow heads to dry and planting on ridges, raised beds or well drained soils prevents water logging around the plants.{{Cite web|title=Bacterial Soft Rot on Brassica|url=https://www.plantwise.org/KnowledgeBank/factsheetforfarmers/20137804284|access-date=2020-06-10|publisher=Plantwise Knowledge Bank}}

Plantwise partners also recommend thorough washing and disinfection of crates for to prevent post-harvest losses and that crop rotation with leguminous crops and cereals is practiced.{{Cite web|title=Bacterial soft rot on cabbage|url=https://www.plantwise.org/KnowledgeBank/pmdg/20167800615|access-date=2020-06-10|publisher=Plantwise Knowledge Bank}}

Gas sensors can be used to detect the pathogen in storage. Specifically metal–oxide–semiconductor-, electrochemical-, photoionization-, and nondispersive infrared- sensors are known to be useful. These are all tested, found to be usable, and calibrations provided in Rutolo et al. 2018.

{{ Unbulleted list citebundle

| These reviews ...

|{{*}} {{ Cite journal |

language =en|

year =2019|

volume =118|

publisher =Elsevier BV|

issn =0165-9936|

journal =TrAC Trends in Analytical Chemistry|

pages =194–206|

first3 =Ozi|

first2 =Ganjar|

first1 =Tawfik|

last3 =Saputra|

last2 =Fadillah|

last1 =Saleh|

title =Nanoparticles as components of electrochemical sensing platforms for the detection of petroleum pollutants: A review|

doi =10.1016/j.trac.2019.05.045}}

|{{*}} {{ Cite journal |

language=en|

year=2020|

volume=58|

issue=1|

pages=225–252|

publisher=Annual Reviews|

first=Erich|

title=Remote Sensing of Diseases|

last=Oerke|

journal=Annual Review of Phytopathology|

issn=0066-4286|

doi=10.1146/annurev-phyto-010820-012832|doi-access=free|

pmid=32853102}}

| ...cite this study:

|{{*}} {{ Cite journal |

language =en|

access-date=|

year =2018|

volume =145|

pages =15–19|

publisher =Elsevier BV|

first4 =James|

first3 =Glyn|

first2 =John|

first1 =Massimo|

last4 =Covington|

last3 =Harper|

last2 =Clarkson|

last1 =Rutolo|

title =The use of gas phase detection and monitoring of potato soft rot infection in store|

id =JAC {{ORCID|0000-0003-1307-6488}}|

doi =10.1016/j.postharvbio.2018.05.016|

journal =Postharvest Biology and Technology|

issn =0925-5214|

url=http://wrap.warwick.ac.uk/102753/7/WRAP-use-gas-phase-detection-monitoring-potato-soft-infection-Covington-2018.pdf}}

}}

Sources

{{Free-content attribution

| title = Plantwise Factsheets for Farmers: Bacterial Soft Rot on Brassica

| author = KENGAP Horticulture

| publisher = CAB International + Plantwise

| page numbers =

| source =

| documentURL = https://www.plantwise.org/KnowledgeBank/factsheetforfarmers/20137804284

| license statement URL = https://www.cabi.org/terms-and-conditions/

| license = CC-BY-SA

}}

{{Free-content attribution

| title = PMDG: Bacterial soft rot on cabbage

| author = Jonathan M. Gekone (MOALF), Stephen Koech (KALRO) and Miriam Otipa (KALRO)

| publisher = CAB International + Plantwise

| page numbers =

| source =

| documentURL = https://www.plantwise.org/KnowledgeBank/pmdg/20167800615

| license statement URL = https://www.cabi.org/terms-and-conditions/

| license = CC-BY-SA

}}


References

{{Reflist}}

Further reading

  • {{Cite journal|publisher=John Wiley & Sons Ltd|last1=Czajkowski|first1=R.|last2=Pérombelon|first2=M.C.M.|last3=Jafra|first3=S.|last4=Lojkowska|first4=E.|last5=Potrykus|first5=M.|last6=van der Wolf|first6=J.M.|last7=Sledz|first7=W.|title=Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review|journal=Annals of Applied Biology|volume=166|issue=1|date=2014-10-27|issn=0003-4746|doi=10.1111/aab.12166|pages=18–38|pmid=25684775 |id=Association of Applied Biologists|pmc=4320782}}

:* Which cites this study:

::{{cite journal|date=2014|last1=Waleron|first1=M|last2=Waleron|first2=K|last3=Lojkowska|first3=E|title=Characterization of Pectobacterium carotovorum subsp. odoriferum causing soft rot of stored vegetables|journal=European Journal of Plant Pathology|volume=139|issue=4 March 2014|pages=457–469|doi=10.1007/s10658-014-0403-z|s2cid=17297335|id={{S2CID|254466686}}|doi-access=free|bibcode=2014EJPP..139..457W }}