PhenomicDB
PhenomicDB is a free phenotype oriented database. It contains data for some of the main model organisms such as Homo sapiens, Mus musculus, Drosophila melanogaster, and others. PhenomicDB merges and structures phenotypic data from various public sources: WormBase, FlyBase, NCBI Gene, MGI and ZFIN using clustering algorithms. The website is now offline.{{Cite web |url=http://www.phenomicdb.de/ |title=PhenomicDB |access-date=14 May 2017 |archive-url=http://arquivo.pt/wayback/20160517094410/http://www.phenomicdb.de/ |archive-date=17 May 2016 |url-status=dead }}
References
Further reading
- {{cite journal |vauthors=Groth P, Kalev I, Kirov I, Traikov B, Leser U, Weiss B |title=Phenoclustering: online mining of cross-species phenotypes |journal=Bioinformatics |volume=26 |issue=15 |pages=1924–5 |date=August 2010 |pmid=20562418 |pmc=2905556 |doi=10.1093/bioinformatics/btq311 }}
- {{cite journal |vauthors=Groth P, Pavlova N, Kalev I, Tonov S, Georgiev G, Pohlenz HD, Weiss B |title=PhenomicDB: a new cross-species genotype/phenotype resource |journal=Nucleic Acids Research |volume=35 |issue=Database issue |pages=D696–9 |date=January 2007 |pmid=16982638 |pmc=1781118 |doi=10.1093/nar/gkl662 }}
- {{cite journal |vauthors=Kahraman A, Avramov A, Nashev LG, Popov D, Ternes R, Pohlenz HD, Weiss B |title=PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics |journal=Bioinformatics |volume=21 |issue=3 |pages=418–20 |date=February 2005 |pmid=15374875 |doi=10.1093/bioinformatics/bti010 |doi-access=free }}
- {{Cite journal | last1 = Groth | first1 = Philip | last2 = Weiss | first2 = Bertram | doi = 10.2174/157489306777828008 | title = Phenotype Data: A Neglected Resource in Biomedical Research? | journal = Current Bioinformatics | volume = 1 | issue = 3 | pages = 347–358 | year = 2006 | citeseerx = 10.1.1.327.800 }}
- {{Cite journal | last1 = Groth | first1 = Philip | last2 = Weiss | first2 = Bertram | last3 = Pohlenz | first3 = Hans-Dieter | last4 = Leser | first4 = Ulf | title = Mining phenotypes for gene function prediction | doi = 10.1186/1471-2105-9-136 | journal = BMC Bioinformatics | volume = 9 | pages = 136 | year = 2008 | pmid = 18315868| pmc =2311305 | doi-access = free }}
External links
- {{Official website|http://www.phenomicdb.de}}
{{bioinformatics-stub}}