Planctomycetaceae

{{Short description|Family of bacteria}}

{{Automatic taxobox

| image = Planctomyces bekefii.jpg

| image_caption = Microscopy image of Planctomyces bekefii, showing how its stalk-like structures connect cells into a conglomerate.

| parent_authority = Schlesner and Stackebrandt 1987

| taxon = Planctomycetaceae

| authority = Schlesner and Stackebrandt 1987{{cite journal | vauthors = Schlesner H, ((Stackebrandt E.)) | title = Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov. | journal = Syst. Appl. Microbiol. | year = 1986 | volume = 8 | issue = 3 | pages = 174–176| doi = 10.1016/S0723-2020(86)80072-8 }}

| subdivision_ranks = Genera

| subdivision_ref =

| subdivision = See section "Phylogeny"

| synonyms =

  • "Symmachiellaceae" Pallen, Rodriguez-R & Alikhan 2022

}}

Planctomycetaceae is the only family in the order Planctomycetales within the Bacteria.{{cite web | vauthors = Euzéby JP, Parte AC | url = https://lpsn.dsmz.de/order/planctomycetales | title = Planctomycetales | access-date = August 25, 2021 | publisher = List of Prokaryotic names with Standing in Nomenclature (LPSN)}} Species within this family are mostly spherical, inhabiting a vast array of aquatic environments with the majority being in marine ecosystems.{{Cite journal |last=Wiegand |first=Sandra |last2=Jogler |first2=Mareike |last3=Boedeker |first3=Christian |last4=Pinto |first4=Daniela |last5=Vollmers |first5=John |last6=Rivas-Marín |first6=Elena |last7=Kohn |first7=Timo |last8=Peeters |first8=Stijn H. |last9=Heuer |first9=Anja |last10=Rast |first10=Patrick |last11=Oberbeckmann |first11=Sonja |last12=Bunk |first12=Boyke |last13=Jeske |first13=Olga |last14=Meyerdierks |first14=Anke |last15=Storesund |first15=Julia E. |date=January 2020 |title=Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology |url=https://www.nature.com/articles/s41564-019-0588-1 |journal=Nature Microbiology |language=en |volume=5 |issue=1 |pages=126–140 |doi=10.1038/s41564-019-0588-1 |issn=2058-5276 |pmc=7286433 |pmid=31740763}} Planctomycetaceae species are generally aerobic, but are uniquely classified by fatty acid synthesis and stalk-like formations.{{Cite journal |last=Vitorino |first=Inês Rosado |last2=Lage |first2=Olga Maria |date=2022-02-01 |title=The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes |url=https://link.springer.com/article/10.1007/s10482-021-01699-0 |journal=Antonie van Leeuwenhoek |language=en |volume=115 |issue=2 |pages=169–201 |doi=10.1007/s10482-021-01699-0 |issn=1572-9699|url-access=subscription }}

Morphology

When compared to other species of the order Planctomycetales, species of the Planctomycetaceae family have very few unique characteristics that can taxonomically distinguish them from other related families. Planctomycetaceae species typically form colonies of a pink or white hue.{{Cite journal |last=Vitorino |first=Inês Rosado |last2=Lage |first2=Olga Maria |date=2022-02-01 |title=The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes |url=https://link.springer.com/article/10.1007/s10482-021-01699-0 |journal=Antonie van Leeuwenhoek |language=en |volume=115 |issue=2 |pages=169–201 |doi=10.1007/s10482-021-01699-0 |issn=1572-9699|url-access=subscription }} Their cell structure has been recorded to be spherical, but many species are elliptical or pear-shaped; all species range from 0.4 micrometers to 2.5 micrometers in size.{{Cite web |last=Wiegand |first=Sandra |last2=Jogler |first2=Mareike |last3=Jogler |first3=Christian |date=November 2018 |title=On the maverick Planctomycetes |url=https://academic.oup.com/femsre/article/42/6/739/5057868 |access-date=2024-11-11 |website=academic.oup.com |doi=10.1093/femsre/fuy029}}

When reproducing, cell structures of Planctomycetaceae are usually observed to be in either a rosette or aggregate grouping; the species Thalassoglobus neptunius is the only known example in this family capable of growing in chains. Some members of Planctomycetaceae (including other taxonomic groups of Planctomycetota) develop stalk-like projections. The species Planctomyces bekefii is well-known in this family for its stalks, using them to connect newly produced cells.

Physiology

Families in Planctomycetales that have more research conducted have been noted to undergo anaerobic respiration, with the family Brocadiaceae being well known for its anaerobic ammonium redox (anammox) capabilities.{{Cite journal |last=Kuypers |first=Marcel M. M. |last2=Sliekers |first2=A. Olav |last3=Lavik |first3=Gaute |last4=Schmid |first4=Markus |last5=Jørgensen |first5=Bo Barker |last6=Kuenen |first6=J. Gijs |last7=Sinninghe Damsté |first7=Jaap S. |last8=Strous |first8=Marc |last9=Jetten |first9=Mike S. M. |date=April 2003 |title=Anaerobic ammonium oxidation by anammox bacteria in the Black Sea |url=https://www.nature.com/articles/nature01472 |journal=Nature |language=en |volume=422 |issue=6932 |pages=608–611 |doi=10.1038/nature01472 |issn=1476-4687|url-access=subscription }} Planctomycetaceae is one of the many families of Planctomycetales that is both aerobic and cannot do anammox reactions.{{Cite journal |last=Vitorino |first=Inês Rosado |last2=Lage |first2=Olga Maria |date=2022-02-01 |title=The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes |url=https://link.springer.com/article/10.1007/s10482-021-01699-0 |journal=Antonie van Leeuwenhoek |language=en |volume=115 |issue=2 |pages=169–201 |doi=10.1007/s10482-021-01699-0 |issn=1572-9699|url-access=subscription }}

Similar to other families, members of Planctomycetaceae are capable of motility using flagella with some having cycles of motile and immotile lifestyles.{{Cite web |last=Wiegand |first=Sandra |last2=Jogler |first2=Mareike |last3=Jogler |first3=Christian |date=November 2018 |title=On the maverick Planctomycetes |url=https://academic.oup.com/femsre/article/42/6/739/5057868 |access-date=2024-11-11 |website=academic.oup.com |doi=10.1093/femsre/fuy029}} Standing out from other bacteria, this group has been able to utilize its stalk-like structures to aid in biofilm production, providing a second source of adherence than usual extracellular polymeric substances.

Fatty acids and lipids synthesized by Planctomycetaceae are similar in composition to other families of the order Planctomycetales, but are unique enough to be considered taxonomically critical. Phosphocholine, phosphatidylcholine, and phosphatidylglycerol are considered the major lipids of this family, which only some other families are capable of synthesizing. Most notably, fatty acid C18:1-ω9C is synthesized only within this family of Planctomycete bacteria.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web | author=J.P. Euzéby | url=https://lpsn.dsmz.de/family/planctomycetaceae | title=Planctomycetaceae | access-date=2022-09-09 | publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)}} and National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=126&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Planctomycetaceae |access-date=2022-09-09 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database |display-authors=et al.}} As of 2022, researchers have discovered that there are currently 14 genera and 29 species within Planctomycetaceae.{{Cite journal |last=Vitorino |first=Inês Rosado |last2=Lage |first2=Olga Maria |date=2022-02-01 |title=The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes |url=https://link.springer.com/article/10.1007/s10482-021-01699-0 |journal=Antonie van Leeuwenhoek |language=en |volume=115 |issue=2 |pages=169–201 |doi=10.1007/s10482-021-01699-0 |issn=1572-9699|url-access=subscription }}

class="wikitable"
colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}

! colspan=1 | 120 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}

style="vertical-align:top|

{{Clade | style=font-size:90%;line-height:80%

|1={{clade

|1={{clade

|1=Schlesneria Kulichevskaya et al. 2007

|2=Planctopirus Scheuner et al. 2015

}}

|2={{clade

|1={{clade

|1=Polystyrenella Peeters et al. 2021

|2=Symmachiella Salbreiter et al. 2021

}}

|2={{clade

|1={{clade

|1=Fuerstiella Kohn et al. 2020

|2=Gimesia Scheuner et al. 2015

}}

|2={{clade

|1={{clade

|1=Thalassoroseus Kumar et al. 2023

|2={{clade

|1=Stratiformator Kumar et al. 2024

|2={{clade

|1=Calycomorphotria Schubert et al. 2021

|2=Alienimonas Boersma et al. 2021

}}

}}

}}

|2={{clade

|1=Rubinisphaera Scheuner et al. 2015

|2={{clade

|1=Maioricimonas Rivas-Marin et al. 2021

|2={{clade

|1=Caulifigura Kallscheuer et al. 2021

|2={{clade

|1=Planctomicrobium Kulichevskaya et al. 2015

|2=Thalassoglobus Kohn et al. 2020

}}

}}

}}

}}

}}

}}

}}

}}

}}

|

{{Clade | style=font-size:90%;line-height:80%

|1={{clade

|1=Symmachiella

|2={{clade

|1={{clade

|1=Schlesneria

|2=Planctopirus

}}

|2={{clade

|1={{clade

|1={{clade

|1=Polystyrenella

|2=Thalassoroseus

}}

|2={{clade

|1=Fuerstiella

|2={{clade

|1=Calycomorphotria

|2=Alienimonas

}}

}}

}}

|2={{clade

|1=Gimesia

|2={{clade

|1=Rubinisphaera

|2={{clade

|1=Maioricimonas

|2={{clade

|1=Caulifigura

|2={{clade

|1=Planctomicrobium

|2=Thalassoglobus

}}

}}

}}

}}

}}

}}

}}

}}

}}

Genera incertae sedis:

See also

References

{{Reflist}}

{{Bacteria classification}}

{{Taxonbar|from1=Q131798|from2=Q18674592}}

Category:Planctomycetota

Category:Bacteria families