Protein dimer

{{Short description|Macromolecular complex formed by two, usually non-covalently bound, macromolecules}}

File:Galactose-1-phosphate uridylyltransferase 1GUP.png of a dimer of Escherichia coli galactose-1-phosphate uridylyltransferase (GALT) in complex with UDP-galactose. Potassium, zinc, and iron ions are visible as purple, gray, and bronze-colored spheres respectively.]]

In biochemistry, a protein dimer is a macromolecular complex or multimer formed by two protein monomers, or single proteins, which are usually non-covalently bound. Many macromolecules, such as proteins or nucleic acids, form dimers. The word dimer has roots meaning "two parts", di- + -mer. A protein dimer is a type of protein quaternary structure.

A protein homodimer is formed by two identical proteins while a protein heterodimer is formed by two different proteins.

Most protein dimers in biochemistry are not connected by covalent bonds. An example of a non-covalent heterodimer is the enzyme reverse transcriptase, which is composed of two different amino acid chains.{{cite journal |vauthors=Sluis-Cremer N, Hamamouch N, San Félix A, Velazquez S, Balzarini J, Camarasa MJ | title = Structure-activity relationships of [2',5'-bis-O-(tert-butyldimethylsilyl)-beta-D-ribofuranosyl]- 3'-spiro-5' '-(4' '-amino-1' ',2' '-oxathiole-2' ',2' '-dioxide)thymine derivatives as inhibitors of HIV-1 reverse transcriptase dimerization | journal = J. Med. Chem. | volume = 49 | issue = 16 | pages = 4834–41 |date=August 2006 | pmid = 16884295 | doi = 10.1021/jm0604575 }} An exception is dimers that are linked by disulfide bridges such as the homodimeric protein NEMO.{{cite journal |vauthors=Herscovitch M, Comb W, Ennis T, Coleman K, Yong S, Armstead B, Kalaitzidis D, Chandani S, Gilmore TD | title = Intermolecular disulfide bond formation in the NEMO dimer requires Cys54 and Cys347 | journal = Biochemical and Biophysical Research Communications | volume = 367 | issue = 1 | pages = 103–8 |date=February 2008 | pmid = 18164680 | pmc = 2277332 | doi = 10.1016/j.bbrc.2007.12.123 }}

Some proteins contain specialized domains to ensure dimerization (dimerization domains) and specificity.{{Cite journal|last1=Amoutzias|first1=Grigoris D.|last2=Robertson|first2=David L.|last3=Van de Peer|first3=Yves|last4=Oliver|first4=Stephen G.|date=2008-05-01|title=Choose your partners: dimerization in eukaryotic transcription factors|journal=Trends in Biochemical Sciences|volume=33|issue=5|pages=220–229|doi=10.1016/j.tibs.2008.02.002|issn=0968-0004|pmid=18406148}}

The G protein-coupled cannabinoid receptors have the ability to form both homo- and heterodimers with several types of receptors such as mu-opioid, dopamine and adenosine A2 receptors.{{Cite journal |last1=Filipiuc |first1=Leontina Elena |last2=Ababei |first2=Daniela Carmen |last3=Alexa-Stratulat |first3=Teodora |last4=Pricope |first4=Cosmin Vasilica |last5=Bild |first5=Veronica |last6=Stefanescu |first6=Raluca |last7=Stanciu |first7=Gabriela Dumitrita |last8=Tamba |first8=Bogdan-Ionel |date=2021-11-01 |title=Major Phytocannabinoids and Their Related Compounds: Should We Only Search for Drugs That Act on Cannabinoid Receptors? |journal=Pharmaceutics |volume=13 |issue=11 |pages=1823 |doi=10.3390/pharmaceutics13111823 |doi-access=free |issn=1999-4923 |pmc=8625816 |pmid=34834237}}

Examples

Alkaline phosphatase

E. coli alkaline phosphatase, a dimer enzyme, exhibits intragenic complementation.{{Cite journal |doi=10.1006/jmbi.2000.4230|title=Characterization of Heterodimeric Alkaline Phosphatases from Escherichia coli: An Investigation of Intragenic Complementation |year=2000 |last1=Hehir |first1=Michael J. |last2=Murphy |first2=Jennifer E. |last3=Kantrowitz |first3=Evan R. |journal=Journal of Molecular Biology |volume=304 |issue=4 |pages=645–656 |pmid=11099386 }} That is, when particular mutant versions of alkaline phosphatase were combined, the heterodimeric enzymes formed as a result exhibited a higher level of activity than would be expected based on the relative activities of the parental enzymes. These findings indicated that the dimer structure of the E. coli alkaline phosphatase allows cooperative interactions between the constituent mutant monomers that can generate a more functional form of the holoenzyme. The dimer has two active sites, each containing two zinc ions and a magnesium ion.Hjorleifsson, Jens Gu[eth]Mundur, and Bjarni Asgeirsson. "Cold-Active Alkaline Phosphatase Is Irreversibly Transformed into an Inactive Dimer by Low Urea Concentrations." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol. 1864, no. 7, 2016, pp. 755–765, https://doi.org/10.1016/j.bbapap.2016.03.016.

See also

References

{{reflist}}

  • Conn. (2013). G protein coupled receptors modeling, activation, interactions and virtual screening (1st ed.). Academic Press.
  • Matthews, Jacqueline M. Protein Dimerization and Oligomerization in Biology. Springer New York, 2012.

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Category:Protein structure

Category:Dimers (chemistry)

Category:Protein complexes