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ProteoWizard

{{Short description|Mass spectrometry software in proteomics}}

{{Infobox software

| name = ProteoWizard

| title =ProteoWizard

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| released = {{Start date and age|2008|03|14|df=yes}}

| latest release version = 3.0

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| programming language = C++, C#

| operating system = Windows, (partial support for OS X and Linux)

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| genre = Bioinformatics / Mass spectrometry software

| license = Apache license 2.0

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| website = {{URL|http://proteowizard.sourceforge.net/}}

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ProteoWizard is a set of open-source, cross-platform tools and libraries for proteomics data analyses. It provides a framework for unified mass spectrometry data file access and performs standard chemistry and LCMS dataset computations. Specifically, it is able to read many of the vendor-specific, proprietary formats and converting the data into an open data format.

On the application level, the software provides executables for data conversion (msConvert, msConvertGUI and idConvert), data visualization (msPicture and seeMS), data access (msAccess, msCat, idCat and msPicture), data analysis (peekaboo and msPrefix14) and basic proteomics utilities (chainsaw). In addition, the project also hosts the Skyline software which helps to create, acquire and analyze targeted proteomics experiments such as SRM experiments.

The main contributors to the project are the Tabb, MacCoss and Mallick research labs as well as Insilicos.[http://proteowizard.sourceforge.net/team.shtml ProteoWizard: Team]

See also

References

{{Cite journal | last1 = Kessner | first1 = D. | last2 = Chambers | first2 = M. | last3 = Burke | first3 = R. | last4 = Agus | first4 = D. | last5 = Mallick | first5 = P. | title = ProteoWizard: open source software for rapid proteomics tools development | journal = Bioinformatics | volume = 24 | issue = 21 | pages = 2534–6 |date=Nov 2008 | doi = 10.1093/bioinformatics/btn323 | pmid = 18606607 | pmc=2732273}}

{{Cite journal | last1 = Chambers | first1 = MC. | last2 = Maclean | first2 = B. | last3 = Burke | first3 = R. | last4 = Amodei | first4 = D. | last5 = Ruderman | first5 = DL. | last6 = Neumann | first6 = S. | last7 = Gatto | first7 = L. | last8 = Fischer | first8 = B. | last9 = Pratt | first9 = B. | last10 = Egertson | first10 = Jarrett | last11 = Hoff | first11 = Katherine | last12 = Kessner | first12 = Darren | last13 = Tasman | first13 = Natalie | last14 = Shulman | first14 = Nicholas | last15 = Frewen | first15 = Barbara | last16 = Baker | first16 = Tahmina A | last17 = Brusniak | first17 = Mi-Youn | last18 = Paulse | first18 = Christopher | last19 = Creasy | first19 = David | last20 = Flashner | first20 = Lisa | last21 = Kani | first21 = Kian | last22 = Moulding | first22 = Chris | last23 = Seymour | first23 = Sean L | last24 = Nuwaysir | first24 = Lydia M | last25 = Lefebvre | first25 = Brent | last26 = Kuhlmann | first26 = Frank | last27 = Roark | first27 = Joe | last28 = Rainer | first28 = Paape | last29 = Detlev | first29 = Suckau | last30 = Hemenway | first30 = Tina | title = A cross-platform toolkit for mass spectrometry and proteomics | journal = Nat Biotechnol | volume = 30 | issue = 10 | pages = 918–20 |date=Oct 2012 | doi = 10.1038/nbt.2377 | pmid = 23051804 | display-authors = 8 | pmc = 3471674 }}

External links

  • [http://proteowizard.sourceforge.net/project.shtml Project Homepage]

Category:Free science software

Category:Bioinformatics software

Category:Mass spectrometry software

Category:Proteomics

Category:Software using the Apache license

Category:Chromatography software