Login
Login

SILVA ribosomal RNA database

{{Multiple issues|

{{notability|Companies|date=November 2016}}

{{third-party|date=November 2016}}

}}

SILVA is a ribosomal RNA database{{r|nar|nar2|nar3}} established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon.{{r|self|mpi}}

Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit (LSU - 23S/28S) sequences.{{r|hoepp}}{{failed verification|date=November 2016}} Sequences are provided as files for the ARB software environment.{{r|self}}

See also

  • {{section link|List of biological databases|RNA databases}}

References

{{reflist|refs=

Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014). [https://link.springer.com/protocol/10.1007/978-1-62703-709-9_6 An Introduction to RNA Databases]. Methods in Molecular Biology 1097: 107–123. {{doi|10.1007/978-1-62703-709-9_6}}.

[http://www.mpi-bremen.de/en/Microbial_Genomics_Group.html Environmental Bioinformatics]. Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology. Accessed November 2016.{{third-party inline|date=November 2016}}

Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner (2013). [https://web.archive.org/web/20160510101209/http://nar.oxfordjournals.org/content/41/D1/D590.full The SILVA ribosomal RNA gene database project: improved data processing and web-based tools]. Nucleic Acids Research 41 (D1): D590-D596. {{doi|10.1093/nar/gks1219}}{{third-party inline|date=November 2016}}

{{cite journal|author1=Pelin Yilmaz|author2= Laura Wegener Parfrey|authorlink2=Laura Wegener Parfrey|author3= Pablo Yarza|author4= Jan Gerken|author5= Elmar Pruesse|author6= Christian Quast|author7= Timmy Schweer|author8= Jörg Peplies| author9= Wolfgang Ludwig|author10= Frank Oliver Glöckner |date=2014|title= The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks|journal= Nucleic Acids Research|volume=42|issue=D1|pages= D643–D648|doi=10.1093/nar/gkt1209|pmid= 24293649|pmc= 3965112|doi-access= free}}

Elmar Pruesse, Christian Quast, Katrin Knittel, Bernhard M. Fuchs, Wolfgang Ludwig, Jörg Peplies, Frank Oliver Glöckner (2007). [https://archive.today/20130802040742/http://nar.oxfordjournals.org/content/35/21/7188.full SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB]. Nucleic Acids Research 35 (21): 7188-7196. {{doi|10.1093/nar/gkm864}}{{third-party inline|date=November 2016}}

[http://www.arb-home.de/ Silva]. Ribocon GmbH. Accessed November 2016.{{self-published inline|date=November 2016}}

}}

External links

  • [https://www.arb-silva.de/ SILVA rRNA database project]

Category:Biodiversity databases