User:Ciar/sandbox

User:Ciar/sandbox2

class = "wikitable" style = "float:right; font-size:85%; margin-left:15px; width:550px"

! Scientific Name !! Host !! Common Name

Classified Cytomegaloviruses



Human herpesvirus 5 (HHV-5)


Cercopithecine herpesvirus 5 (CeHV-5)


Cercopithecine herpesvirus 8 (CeHV-8)


Panine herpesvirus 2 (PaHV-2)
Pongine herpesvirus 4 (PoHV-4)

|



Human


African green monkey


Rhesus monkey


Chimpanzee
Orangutan

|



Human CMV (HCMV)


Simian CMV (SCCMV)


Rhesus CMV (RhCMV)


Chimpanzee CMV (CCMV)
"

Unclassified Cytomegaloviruses



Primate CMVs


Aotine herpesvirus 1 (AoHV-1)


Aotine herpesvirus 3 (AoHV-3)


Baboon cytomegalovirus


Cercocebus agilis cytomegalovirus 1


Cercopithecus cephus cytomegalovirus 1


Colobus badius cytomegalovirus 1


Colobus guereza cytomegalovirus 1


Gorilla gorilla cytomegalovirus 1.1


Gorilla gorilla cytomegalovirus 2.1


Gorilla gorilla cytomegalovirus 2.2


Macaca fascicularis cytomegalovirus 1


Mandrillus cytomegalovirus


Pan troglodytes cytomegalovirus 1.1


Pan troglodytes cytomegalovirus 1.2


Pan troglodytes cytomegalovirus 2.1


Pan troglodytes cytomegalovirus 2.2


Pan troglodytes cytomegalovirus 2.3


Pongo pygmaeus cytomegalovirus 1


Pongo pygmaeus cytomegalovirus 1.2


Simian cytomegalovirus


Squirrel monkey cytomegalovirus 1


Rodent CMVs


Apodemus flavicollis cytomegalovirus 1


Apodemus flavicollis cytomegalovirus 2


Apodemus flavicollis cytomegalovirus 3


Apodemus sylvaticus cytomegalovirus 1


Arvicola terrestris cytomegalovirus 1


Bandicota indica cytomegalovirus 1


Bandicota indica cytomegalovirus 2


Bandicota indica cytomegalovirus 3


Bandicota indica cytomegalovirus 4


Crocidura russula cytomegalovirus 1


Microtus agrestis cytomegalovirus 1


Microtus arvalis cytomegalovirus 1


Mus cervicolor cytomegalovirus 1


Mus musculus cytomegalovirus 2


Myodes glareolus cytomegalovirus 1


Ondatra zibethicus cytomegalovirus 1


Rattus exulans cytomegalovirus 1


Rattus rattus cytomegalovirus 1


Rattus tiomanicus cytomegalovirus 1


Other host species CMVs


Cytomegalovirus Eptesicus fuscus/IT/USA/2009


Phacochoerus africanus cytomegalovirus 1


Porcine cytomegalovirus

|




Night monkey


"


Baboon


Agile Mangabey


Moustached Monkey


Western Red Colobus


Mantled Guereza


Gorilla


"


"


Crab-eating Macaque


Mandrill


Chimpanzee


"


"


"


"


Orangutan


"


New World monkey


Squirrel monkey



Yellow-necked Mouse


"


"


Wood mouse


European Water Vole


Greater Bandicoot Rat


"


"


"


Greater White-toothed Shrew


Field vole


Common Vole


Fawn-colored Mouse


House mouse


Bank vole


Muskrat


Polynesian Rat


Black rat


Malayan Field Rat



Big brown bat


Warthog


Pig

==Miscellaneous facts==

=Interferon-alpha=

  • The IFN-alpha family represents a family of related and homologous proteins, each exhibiting a unique activity profile. Each IFN-a species seems to exhibit a distinct profile of activities [antiviral, antiproliferative, and stimulation of cytotoxic activities of natural killer (NK) cells and T cells]
  • For the most part, the IFN-alpha species are not glycosylated, although some contain carbohydrates.
  • Within each subtype of mammalian Type I IFN, there is additional variability in gene duplication. The IFN-a genes are duplicated to a much greater extent than any other subtype of Type I IFN. This observation in conjunction with the observation that the IFN-a subtypes generally possess the highest specific antiviral activity imply that physiologically, the body likely uses IFN-a as the primary antiviral defense protein and that the major function of IFN-a is defense.

=Structure=

  • STRUCTURE: The Type I IFNs consist of five a-helices (labeled A–E) which are linked by one overhand loop (AB loop) and three shorter segments (BC, CD, and DE loops). Helices A, B, C, and E are arranged in an antiparallel fashion to form a left-handed four-helix bundle. The AB loop contains short segments of 3_10 helix and is best described in three segments labeled AB1, AB2, and AB3. In all Type I IFNs, the AB1 loop encircles and is linked to helix E by a disulfide bond. An additional disulfide bond is observed in most IFN-a subtypes but not IFN-b, which connects the N-terminus of the molecule to helix C. The AB loop is critical for high-affinity IFNAR2 binding and suggest that sequence differences in this region may hold the key to differences in biological activity between the different IFN-a subtypes.
  • IFNa2 contain 165 amino acids; according to circular dichroism measurements ~68% of the residues adopt helical conformation.INFa2 is composed of five a-helices, labeled A–E, linked by one long overhand connection (AB loop) and three short segments (BC, CD and DE loops). The topology of the molecule resembles the classical up-up-down-down four-helixbundle motif; helices A, B, C, and E comprise the helix bundle.

=Receptors=

  • The IFNs and IFN-like molecules signal through the Jak-Stat pathway. The receptor for the Type I IFNs consists of two chains, IFN-aR1 and IFN-aR2c. The ligand INF-alpha is a monomer that binds to the two-chain complex of IFN-aR1 and INF-aR2c.

=Unsorted=

  • Type I IFNs are stable at acidic pH (pH 2) and are represented by two major subtypes, the fibroblast or beta interferon (IFN-b) and the leukocyte or alpha family of interferons (IFN-a).

The only known interferon of type II is IFN-g, which is produced exclusively by lymphocytes.

  • Interferon is species-specific: the substance prepared from infected eggs protected only chicken cells from virus infection, while the similar substance prepared from mice protected only mouse cells.
  • Produced by many cells in the human body by a receptor dependent feedback mechanism.
  • Interferons are part of the "first-wave" immune response of the innate immune system, acting within hours, whereas antibody production takes days.
  • In general, exposure of human cells to viruses or double stranded RNAs induces the production of IFN-a, IFN-b, and IFN-o species.
  • The IFNs were the first of the proteins we now recognize as members of the Class II cytokine family.

testing