User:Daniel Mietchen/Talks/Wikipedia for Health/Safety Research and Data 2015

This page belongs to a talk given as part of the Wikipedia for Health/Safety Research and Data (WHSRD) in Washington, DC.

Wikimedia and scholarly communication

There are multiple ways in which Wikimedia platforms interact with scholarly communications. This talk will zoom in to the interface of the two, both on a technical and a community level. It will highlight how content finds its way from scholarly communications into Wikimedia projects and sometimes vice versa, how data, metadata, software, infrastructure and the workflows of people and bots fit into the picture.

A video recording of a similar talk given at CERN some years back is available via https://en.wikipedia.org/wiki/User:Daniel_Mietchen/Talks/CERN_2012 .

• [https://en.wikipedia.org/w/index.php?title={{FULLPAGENAMEE}}&action=purge wiki]
• HTML: [https://en.wikipedia.org/w/index.php?title={{FULLPAGENAMEE}}&action=render desktop] · [https://en.wikipedia.org/w/index.php?title={{FULLPAGENAMEE}}&mobileaction=toggle_view_mobile mobile]
• [https://en.wikipedia.org/w/index.php?title=Special:Book&bookcmd=render_article&arttitle={{FULLPAGENAMEE}}&oldid={{REVISIONID}}&writer=rdf2latex PDF]
• [https://en.wikipedia.org/w/index.php?title=Special:Export&pages={{FULLPAGENAMEE}}&action=submit XML]
• [http://www.wikiwand.com/en/{{FULLPAGENAMEE}} Wikiwand]

File:Wikimedia logo family complete-2013.svg, Wikibooks, {{srlink|m:Main Page|Meta-Wiki}}, Wikiquote, Wikispecies, MediaWiki, Wikimedia Incubator, Wikivoyage, Wikidata, Wikiversity, Wiktionary, Wikinews, Wikisource, Wikimedia Commons, Wikipedia. ]]

{{Wikimedia Foundation}}

• Publishing
• Academic journal
• Wikipedia:WikiProject Academic Journals
• Wikisource:WikiProject Academic Papers
• Wikimedia Commons Category:Open access (publishing)
• Wikidata:WikiProject Source MetaData
• Bibliographic metadata for scholarly articles in Wikidata
• Wikidata:WikiProject Wikidata for research
• Wikidata:WikiProject Periodicals
• Wikidata:WikiProject Books
• Wiki Loves Libraries
• Wikimedians in Residence
• incl. Wikipedia:GLAM/National Library of Scotland and Royal Society of Chemistry

• [https://blog.wikimedia.org/2014/01/15/wikimedia-and-open-access/ Overview]
• Wikipedia article: Open access
• Exists in multiple languages
• Associated Wikidata item
• Multiple Wikimedia entities have [http://openaccess.mpg.de/3883/Signatories signed] the Berlin Declaration on Open Access to Knowledge in the Sciences and Humanities
• Wikipedia:WikiProject Open Access
• Open Access Signalling project
• Open-access policy
• [http://blog.wikimedia.org/2015/03/18/wikimedia-open-access-policy/ Blog post announcing the policy]
• Signpost article about the policy
• highlights differences to typical Open-access policies:
• It covers not just publications, but associated data, software and multimedia;
• It stresses the importance of open licensing, which facilitates and broadens the scope of [http://blogs.plos.org/blog/2012/10/23/reusing-revising-remixing-and-redistributing-research/ reuse];
• It is itself available under an open license, so it can easily be adapted (e.g. translated);
• It avoids embargo periods (which most other policies allow for), and instead allows for limited exceptions;
• The exceptions are to be documented in public, which helps to collect data on the necessity for exceptions and can inform later refinements of the policy.
• [https://wikimediafoundation.org/wiki/Open_access_policy The actual policy]
• [https://wikimediafoundation.org/wiki/Open_access_policy_FAQ FAQ on the policy]
• Licensing is key throughout

• Wikipedia:The Wikipedia Library

• [http://www.ncbi.nlm.nih.gov/pmc/?term=wikipedia example]

• Research Newsletter
• e.g. Amplifying the Impact of Open Access: Wikipedia and the Diffusion of Science

• Wikiversity Journal of Medicine
• Open Access to a High-Quality, Impartial, Point-of-Care Medical Summary Would Save Lives: Why Does It Not Exist?
• [http://riojournal.com RIO Journal]

• Completely natural on Wikimedia platforms
• e.g. WMF Grants and grant schemes by various chapters
• example project: Open Access Media Importer
• Completely unnatural for academics
• New journal to cover research from all steps of the research cycle
• [http://riojournal.com RIO Journal]

• WP:V — verifiability
• [http://tools.wmflabs.org/cite-o-meter/ Wikipedia Cite-o-Meter]
• [http://tools.wmflabs.org/cite-o-meter/index.php?lang=en English Wikipedia]
• [http://tools.wmflabs.org/cite-o-meter/index.php?lang=vi Vietnamese Wikipedia]
• [http://tools.wmflabs.org/cite-o-meter/index.php?doip=10.1371 PLOS]
• [http://tools.wmflabs.org/cite-o-meter/index.php?doip=10.1016 Elsevier]
• [http://tools.wmflabs.org/cite-o-meter/index.php?commons= Wikimedia Commons]
• Journals cited by Wikipedia
• Halfaker, Aaron; Taraborelli, Dario (2015): Scholarly article citations in Wikipedia. figshare. Retrieved 14:22, Feb 27, 2015 (GMT)
• [http://events.labs.crossref.org/events/types/WikipediaCitation CrossRef DOI Events for Wikimedia]
• [http://crosstech.crossref.org/2015/03/real-time-stream-of-dois-being-cited-in-the-wikipedia.html Introductory blog post]
• [http://chronograph.labs.crossref.org/domains/wikipedia.org CrossRef Labs DOI Chronograph]
• [http://crosstech.crossref.org/2015/01/introducing-chronograph.html Introductory blog post]

• [http://scholar.google.co.uk/scholar?q=%22according+to+Wikipedia%2C+*+is%22 examples]

• recent uploads
• [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Open+access+%28publishing%29&depth=5 GLAMorous]
• [http://tools.wmflabs.org/glamtools/baglama2/#gid=97&month=201502 BaGLAMa]

An example of open science - from the grant proposal to all outputs.

• :commons:User:Open Access Media Importer Bot (OAMI)
• imports audio and video files from openly licensed articles in PubMed Central (PMC)
• Stats:
• GLAMorous [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Uploaded+with+Open+Access+Media+Importer&use_globalusage=1&ns0=1&show_details=1&depth=5&projects[wikipedia]=1&projects[wikimedia]=1&projects[wikisource]=1&projects[wikibooks]=1&projects[wikiquote]=1&projects[wiktionary]=1&projects[wikinews]=1&projects[wikivoyage]=1&projects[wikispecies]=1&projects[mediawiki]=1&projects[wikidata]=1&projects[wikiversity]=1 OAMI]
• [http://tools.wmflabs.org/glamtools/baglama2/#gid=129&month=201408 BaGLAMa]
• Expansion to full-text import
• deeplinking
• Wikipedia Zero
• Wikisource is included

• [http://scholar.google.co.uk/scholar?q=%22image+from+wikipedia%22&btnG=&hl=en&as_sdt=0%2C5 "image from Wikipedia"]
• [http://scholar.google.co.uk/scholar?q=%22image+from+wikimedia%22&btnG=&hl=en&as_sdt=0%2C5 "image from Wikimedia" (Commons)]
• [http://scholar.google.co.uk/scholar?q=%22image+source%3A+wikipedia%22&btnG=&hl=en&as_sdt=0%2C5 "image source: Wikipedia"]
• [http://scholar.google.co.uk/scholar?q=%22image+source%3A+wikimedia%22&btnG=&hl=en&as_sdt=0%2C5 "image source: Wikimedia" (Commons)]
• Springer's misappropriation of Wikimedia content "the tip of the iceberg"

• e.g. Wikipedia:Ebola translation task force

• Mechanical Curator
• Rfam/Pfam databases
• Gene Wiki
• [http://blog.wikimedia.de/2014/10/22/establishing-wikidata-as-the-central-hub-for-linked-open-life-science-data/ moving to Wikidata]
• VIAF
• [http://journal.code4lib.org/articles/8964 Integration of VIAF identifiers into Wikidata]
• [http://outgoing.typepad.com/outgoing/2015/03/moving-to-wikidata.html VIAF now links back to Wikidata]
• ChemSpider

• Interoperability
• is key to reuse
• requires standardization

• JATS is the de-facto standard for exchanging journal article content in a machine-readable fashion
• used for articles ingested into PubMed Central
• SciELO content is available in JATS, soon in PMC
• Optical Society of America, Copernicus, BioMed Central, Nature Publishing Group and others moved to JATS, even though not all of their content is going to PMC
• NASA and other US Federal Agencies are planning to build their public access policies around PMC
• Problem: Inconsistent XML as a Barrier to Reuse of Open Access Content
• [http://jats4r.github.io/ JATS4R] is trying to address this
• [http://www.ncbi.nlm.nih.gov/books/NBK279901/ Improving the reusability of JATS]
• Now also with [http://www.ncbi.nlm.nih.gov/books/NBK280240/ data citation]

• [http://listen.hatnote.com/ Listen to Wikipedia]
• [http://wikipulse.herokuapp.com/ Wikipulse]
• [http://www.lkozma.net/wpv/index.html Map of recent edits]
• [http://wikistream.inkdroid.org/ Wikistream]
• [http://stats.wikimedia.org/wikimedia/animations/growth/AnimationProjectsGrowthWp.html Wikimedia project growth animation]
• [https://wikipedia-irc.herokuapp.com/ Wikipedia live monitor]
• [http://www.manypedia.com/#!%7Cen%7CPeriodic%20table%7Cru Manypedia]
• SuggestBot
• [https://twitter.com/wikiredlist Twikipedia]
• Wikidata lists
• e.g. Taxon items with audio
• [http://webobservatory.soton.ac.uk/ Web Observatory]

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"axes": [

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"marks": [

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File:Open research.ogv

• [http://listen.hatnote.com/#wikidata Listen to Wikidata]
• Wikidata presentations from WikiCon USA
• [http://www.slideshare.net/_Emw/an-ambitious-wikidata-tutorial An ambitious Wikidata tutorial]
• [http://dx.doi.org/10.6084/m9.figshare.1572357 Open Biomedial Knowledge: Wikipedia, Wikidata and Beyond]
• Items
• showcase items
• Flock worker's lung
• Properties
• Medical properties
• NIH properties
• Astronomical objects properties
• Chemical compound properties
• Authority control properties
• WikiProjects
• Science Wikiprojects
• Bots
• Tools
• Reasonator
• [https://tools.wmflabs.org/reasonator/?q=Q1035&lang=en Charles Darwin, FRS]
• Wikidata lists
• Species of Trigonopterus
• Items with DOIs
• Sample citations
• Items with ZooBank publication ID
• Items with ORCID
• List of public art in Sylt — check history
• [https://io.datascience-paris-saclay.fr/appDisplayArtefactResearch.php additional tabs]
• [http://magnusmanske.de/wordpress/?p=338 Property suggestor]
• [https://tools.wmflabs.org/wikidata-game/distributed/#game=9 Wikidata game]
• Templates
• Modèle:Infobox Fromage
• :Category:Modules using data from Wikidata
• Module:Taxobox
• WikiProjects
• Science WikiProjects
• WikiProject Wikidata for research
• EU grant proposal
• Follow-up by Haifa University
• Wikidata:WikiProject Source MetaData
• Signalling OA-ness
• Wikidata:Data access
• SPARQL endpoints

• @[https://twitter.com/EvoMRI EvoMRI]
• Wikipedia talk page
• Wikipedia email