cytogenetic notation
{{Short description|Symbols and abbreviations used in cytogenetics}}
The following table summarizes symbols and abbreviations used in cytogenetics:{{Cite web | url=http://www.slh.wisc.edu/clinical/cytogenetics/basics/ | title=Cytogenetics Basics | Wisconsin State Laboratory of Hygiene}}{{Cite journal|date=May 2001|title=ISCN rules for listing chromosomal rearrangements|journal=Current Protocols in Human Genetics|volume=Appendix 4|pages=Appendix 4C|doi=10.1002/0471142905.hga04cs17|issn=1934-8258|pmid=18428230|isbn=978-0471142904|s2cid=46677230}}
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! Symbol !! Description | |
, | Separates modal number (total number of chromosomes), sex chromosomes, and chromosome abnormalities |
- | Loss of a chromosome |
( ) | Grouping for breakpoints and structurally altered chromosomes |
+ | Gain of a chromosome |
; | Separates rearranged chromosomes and breakpoints involving more than one chromosome |
/ | Separates cell lines or clones |
// | Separates recipient and donor cell lines in bone marrow transplants |
del | Deletion |
der | Derivative chromosome |
dic | Dicentric chromosome |
dim | diminished signal intensity |
dn | de novo (not inherited) chromosomal abnormality |
dup | Duplication of a portion of a chromosome |
enh | enhanced signal intensity |
fra | Fragile site (usually used with fragile X syndrome) |
h | Heterochromatic region of chromosome |
i | Isochromosome |
idic | Isodicentric chromosome (duplication & inversion of centromere-containing segment) |
ins | Insertion |
inv | Inversion |
.ish | Precedes karyotype results from FISH analysis |
mar | Marker chromosome |
mat | Maternally-derived chromosome rearrangement |
p | Short arm of a chromosome |
pat | Paternally-derived chromosome rearrangement |
psu dic | pseudo dicentric – only one centromere in a dicentric chromosome is active |
q | Long arm of a chromosome |
r | Ring chromosome |
t | Translocation |
ter | Terminal end of arm (e.g. 2qter refers to the end of the long arm of chromosome 2) |
tri | Trisomy |
trp | Triplication of a portion of a chromosome |
See also
- Chromosome abnormalities
- Directionality (molecular biology) for 3' and 5' notation
- locus (genetics) for basic notational system
- International System for Human Cytogenetic Nomenclature