interatomic potential
{{Short description|Functions for calculating potential energy}}
Interatomic potentials are mathematical functions to calculate the potential energy of a system of atoms with given positions in space.M. P. Allen and D. J. Tildesley. Computer Simulation of Liquids. Oxford University Press, Oxford, England, 1989.Daan Frenkel and Berend Smit. Understanding molecular simulation: from algorithms to applications. Academic Press, San Diego, second edition, 2002.R. Lesar. Introduction to Computational Materials Science. Cambridge University Press, 2013.{{cite journal|last1=Brenner|first1=D.W.|title=The Art and Science of an Analytic Potential|journal=Physica Status Solidi B|volume=217|issue=1|year=2000|pages=23–40|issn=0370-1972|doi=10.1002/(SICI)1521-3951(200001)217:1<23::AID-PSSB23>3.0.CO;2-N|bibcode=2000PSSBR.217...23B}} Interatomic potentials are widely used as the physical basis of molecular mechanics and molecular dynamics simulations in computational chemistry, computational physics and computational materials science to explain and predict materials properties. Examples of quantitative properties and qualitative phenomena that are explored with interatomic potentials include lattice parameters, surface energies, interfacial energies, adsorption, cohesion, thermal expansion, and elastic and plastic material behavior, as well as chemical reactions.N. W. Ashcroft and N. D. Mermin. Solid State Physics.Saunders College, Philadelphia, 1976.Charles Kittel. Introduction to Solid State Physics. John Wiley & Sons, New York, third edition, 1968.{{cite journal|last1=Daw|first1=Murray S.|last2=Foiles|first2=Stephen M.|last3=Baskes|first3=Michael I.|title=The embedded-atom method: a review of theory and applications|journal=Materials Science Reports|volume=9|issue=7–8|year=1993|pages=251–310|issn=0920-2307|doi=10.1016/0920-2307(93)90001-U|url=https://zenodo.org/record/1258631|doi-access=free}}{{cite journal | vauthors = Tersoff J | title = New empirical approach for the structure and energy of covalent systems | journal = Physical Review B | volume = 37 | issue = 12 | pages = 6991–7000 | date = April 1988 | pmid = 9943969 | doi = 10.1103/physrevb.37.6991 | bibcode = 1988PhRvB..37.6991T }}{{cite journal | last=FINNIS | first=M | title=Bond-order potentials through the ages | journal=Progress in Materials Science | volume=52 | issue=2–3 | year=2007 | issn=0079-6425 | doi=10.1016/j.pmatsci.2006.10.003 | pages=133–153}}{{cite journal | last1=Sinnott | first1=Susan B. |author-link1=Susan Sinnott| last2=Brenner | first2=Donald W. | title=Three decades of many-body potentials in materials research | journal=MRS Bulletin | volume=37 | issue=5 | year=2012 | issn=0883-7694 | doi=10.1557/mrs.2012.88 | pages=469–473| doi-access=free | bibcode=2012MRSBu..37..469S }}{{Cite journal |last1=Fischer |first1=Johann |last2=Wendland |first2=Martin |date=October 2023 |title=On the history of key empirical intermolecular potentials |journal=Fluid Phase Equilibria |language=en |volume=573 |pages=113876 |doi=10.1016/j.fluid.2023.113876|bibcode=2023FlPEq.57313876F |doi-access=free }}
Functional form
Interatomic potentials can be written as a series expansion of
functional terms that depend on the position of one, two, three, etc.
atoms at a time. Then the total potential of the system can
::
V_\mathrm{} = \sum_{i = 1}^N V_1(\vec r_i) + \sum_{i,j = 1}^N V_2(\vec r_i,\vec r_j) + \sum_{i,j,k = 1}^N V_3(\vec r_i,\vec r_j,\vec r_k) + \cdots
Here is the one-body term, the two-body term, the
three body term, the number of atoms in the system,
the position of atom , etc. , and are indices
that loop over atom positions.
Note that in case the pair potential is given per atom pair, in the two-body
term the potential should be multiplied by 1/2 as otherwise each bond is counted
twice, and similarly the three-body term by 1/6. Alternatively,
the summation of the pair term can be restricted to cases
and similarly for the three-body term
the potential form is such that it is symmetric with respect to exchange
of the and indices (this may not be the case for potentials
for multielemental systems).
The one-body term is only meaningful if the atoms are in an external
field (e.g. an electric field). In the absence of external fields,
the potential should not depend on the absolute position of
atoms, but only on the relative positions. This means
that the functional form can be rewritten as a function
of interatomic distances
and angles between the bonds
(vectors to neighbours) .
Then, in the absence of external forces, the general
form becomes
::
V_\mathrm{TOT} = \sum_{i,j}^N V_2(r_{ij}) + \sum_{i,j,k}^N V_3(r_{ij},r_{ik},\theta_{ijk}) + \cdots
In the three-body term the
interatomic distance is not needed
since the three terms
are sufficient to give the relative positions of three atoms in three-dimensional space. Any terms of order higher than
2 are also called many-body potentials.
In some interatomic potentials the many-body interactions are
embedded into the terms of a pair potential (see discussion on
EAM-like and bond order potentials below).
In principle the sums in the expressions run over all atoms.
However, if the range of the interatomic potential is finite,
i.e. the potentials above
some cutoff distance ,
the summing can be restricted to atoms within the cutoff
distance of each other. By also using a cellular method
for finding the neighbours, the MD algorithm can be
an O(N) algorithm. Potentials with an infinite
range can be summed up efficiently by Ewald summation
and its further developments.
Force calculation
The forces acting between atoms can be obtained by differentiation of
the total energy with respect to atom positions. That is,
to get the force on atom one should take the three-dimensional
derivative (gradient) of the potential with respect to the position of atom :
::
\vec{F}_i = -\nabla_{\vec {r}_i} V_\mathrm{TOT}
For two-body potentials this gradient reduces, thanks to the
symmetry with respect to in the potential form, to straightforward
differentiation with respect to the interatomic distances
. However, for many-body
potentials (three-body, four-body, etc.) the differentiation
becomes considerably more complex
since the potential may not be any longer symmetric with respect to exchange.
In other words, also the energy
of atoms that are not direct neighbours of can depend on the position
because of angular and other many-body terms, and hence contribute to the gradient
.
Classes of interatomic potentials
Interatomic potentials come in many different varieties, with
different physical motivations. Even for single well-known elements such as silicon,
a wide variety of potentials quite different in functional form and motivation have been developed.{{cite journal | vauthors = Balamane H, Halicioglu T, Tiller WA | title = Comparative study of silicon empirical interatomic potentials | journal = Physical Review B | volume = 46 | issue = 4 | pages = 2250–2279 | date = July 1992 | pmid = 10003901 | doi = 10.1103/physrevb.46.2250 | bibcode = 1992PhRvB..46.2250B }}
The true interatomic interactions
are quantum mechanical in nature, and there is no known
way in which the true interactions described by
the Schrödinger equation or Dirac equation for
all electrons and nuclei could be cast into an analytical
functional form. Hence all analytical interatomic
potentials are by necessity approximations.
Over time interatomic potentials have largely grown more complex and more accurate, although this is not strictly true.{{cite journal | vauthors = Plimpton SJ, Thompson AP | title = Computational aspects of many-body potentials | journal = MRS Bull. | volume = 37 | pages = 513–521 | year = 2012| issue = 5 | doi = 10.1557/mrs.2012.96 | bibcode = 2012MRSBu..37..513P | s2cid = 138567968 }} This has included both increased descriptions of physics, as well as added parameters. Until recently, all interatomic potentials could be described as "parametric", having been developed and optimized with a fixed number of (physical) terms and parameters. New research focuses instead on non-parametric potentials which can be systematically improvable by using complex local atomic neighbor descriptors and separate mappings to predict system properties, such that the total number of terms and parameters are flexible.{{Cite journal | last=Shapeev | first=Alexander V. | s2cid=28970251|date=2016-09-13 | title=Moment Tensor Potentials: A Class of Systematically Improvable Interatomic Potentials|journal=Multiscale Modeling & Simulation | language=en | volume=14 | issue=3 | pages=1153–1173 | doi=10.1137/15M1054183 | issn=1540-3459 | arxiv=1512.06054}} These non-parametric models can be significantly more accurate, but since they are not tied to physical forms and parameters, there are many potential issues surrounding extrapolation and uncertainties.
=Parametric potentials=
== [[Pair potential]]s ==
The arguably simplest widely used interatomic interaction model is the Lennard-Jones potential
{{cite journal |last=Lennard-Jones |first=J. E. |year=1924 |title=On the Determination of Molecular Fields |journal=Proc. R. Soc. Lond. A |volume=106 |issue=738 |pages=463–477 |doi=10.1098/rspa.1924.0082 |bibcode = 1924RSPSA.106..463J |doi-access=free }}.{{Cite journal |last1=Lenhard |first1=Johannes |last2=Stephan |first2=Simon |last3=Hasse |first3=Hans |date=June 2024 |title=On the History of the Lennard-Jones Potential |url=https://onlinelibrary.wiley.com/doi/10.1002/andp.202400115 |journal=Annalen der Physik |language=en |volume=536 |issue=6 |doi=10.1002/andp.202400115 |issn=0003-3804|url-access=subscription |doi-access=free }}
::
V_\mathrm{LJ}(r) = 4\varepsilon \left[ \left(\frac{\sigma}{r}\right)^{12} - \left(\frac{\sigma}{r}\right)^{6} \right]
where is the depth of the potential well
and is the distance at which the potential crosses zero.
The attractive term proportional to in the potential comes from the scaling of van der Waals forces, while the repulsive term is much more approximate (conveniently the square of the attractive term). On its own, this potential is quantitatively accurate only for noble gases and has been extensively studied in the past decades,{{Cite journal |last1=Stephan |first1=Simon |last2=Thol |first2=Monika |last3=Vrabec |first3=Jadran |last4=Hasse |first4=Hans |date=2019-10-28 |title=Thermophysical Properties of the Lennard-Jones Fluid: Database and Data Assessment |url=https://pubs.acs.org/doi/10.1021/acs.jcim.9b00620 |journal=Journal of Chemical Information and Modeling |language=en |volume=59 |issue=10 |pages=4248–4265 |doi=10.1021/acs.jcim.9b00620 |pmid=31609113 |s2cid=204545481 |issn=1549-9596}} but is also widely used for qualitative studies and in systems where dipole interactions are significant, particularly in chemistry force fields to describe intermolecular interactions - especially in fluids.{{Cite journal |last1=Stephan |first1=Simon |last2=Horsch |first2=Martin T. |last3=Vrabec |first3=Jadran |last4=Hasse |first4=Hans |date=2019-07-03 |title=MolMod – an open access database of force fields for molecular simulations of fluids |url=https://www.tandfonline.com/doi/full/10.1080/08927022.2019.1601191 |journal=Molecular Simulation |language=en |volume=45 |issue=10 |pages=806–814 |doi=10.1080/08927022.2019.1601191 |s2cid=119199372 |issn=0892-7022|arxiv=1904.05206 }}
Another simple and widely used pair potential is the
Morse potential, which consists simply of a sum of two exponentials.
::
Here is the equilibrium bond energy and
the bond distance. The Morse
potential has been applied to studies of molecular vibrations and solids,{{cite journal | last1=Girifalco | first1=L. A. | last2=Weizer | first2=V. G. | title=Application of the Morse Potential Function to Cubic Metals | journal=Physical Review | volume=114 | issue=3 | date=1 April 1959 | issn=0031-899X | doi=10.1103/physrev.114.687 | pages=687–690| bibcode=1959PhRv..114..687G | hdl=10338.dmlcz/103074 | hdl-access=free }} and also inspired the functional form of more accurate potentials such as the bond-order potentials.
Ionic materials are often described by a sum of a
short-range repulsive term, such as the
Buckingham pair potential, and a long-range Coulomb potential
giving the ionic interactions between the ions forming the material. The short-range
term for ionic materials can also be of many-body character
Pair potentials have some inherent limitations, such as the inability
to describe all 3 elastic constants of
cubic metals or correctly describe both cohesive energy and vacancy formation energy. Therefore, quantitative molecular dynamics simulations
are carried out with various of many-body potentials.
=== Repulsive potentials ===
For very short interatomic separations, important in radiation material science,
the interactions can be described quite accurately with screened Coulomb potentials which have the general form
:
Here, when . and are the charges of the interacting nuclei, and is the so-called screening parameter.
A widely used popular screening function is the "Universal ZBL" one.J. F. Ziegler, J. P. Biersack, and U. Littmark. The Stopping and Range of Ions in Matter. Pergamon, New York, 1985.
and more accurate ones can be obtained from all-electron quantum chemistry calculations
{{cite journal | last1=Nordlund | first1=K. | last2=Runeberg | first2=N. | last3=Sundholm | first3=D. | title=Repulsive interatomic potentials calculated using Hartree-Fock and density-functional theory methods | journal=Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms | volume=132 | issue=1 | year=1997 | issn=0168-583X | doi=10.1016/s0168-583x(97)00447-3 | pages=45–54| bibcode=1997NIMPB.132...45N }}{{Cite journal |last=Nordlund |first=Kai |last2=Lehtola |first2=Susi |last3=Hobler |first3=Gerhard |date=2025-03-26 |title=Repulsive interatomic potentials calculated at three levels of theory |url=https://journals.aps.org/pra/abstract/10.1103/PhysRevA.111.032818 |journal=Physical Review A |volume=111 |issue=3 |pages=032818 |doi=10.1103/PhysRevA.111.032818|doi-access=free |arxiv=2501.06617 }}
In a comparative study of several quantum chemistry methods, it was shown that pair-specific "NLH" repulsive potentials with a simple three-exponential screening function are accurate to within ~2% above 30 eV, while the universal ZBL potential differs by ~5%–10% from the quantum chemical calculations above 100 eV. In binary collision approximation simulations this kind of potential can be used
to describe the nuclear stopping power.
== Many-body potentials ==
The Stillinger-Weber potential{{cite journal | vauthors = Stillinger FH, Weber TA | title = Computer simulation of local order in condensed phases of silicon | journal = Physical Review B | volume = 31 | issue = 8 | pages = 5262–5271 | date = April 1985 | pmid = 9936488 | doi = 10.1103/physrevb.31.5262 | bibcode = 1985PhRvB..31.5262S }} is a potential that has a
two-body and three-body terms of the standard form
::
V_\mathrm{TOT} = \sum_{i,j}^N V_2(r_{ij}) + \sum_{i,j,k}^N V_3(r_{ij},r_{ik},\theta_{ijk})
where the three-body term describes how the potential energy changes with bond bending.
It was originally developed for pure Si, but has been extended to many other
elements and compounds
and also formed the basis for other Si potentials.{{cite journal|last1=Bazant|first1=M. Z.|last2=Kaxiras|first2=E.|last3=Justo|first3=J. F.|s2cid=17860100|title=Environment-dependent interatomic potential for bulk silicon|journal=Phys. Rev. B|date=1997|volume=56|issue=14|page=8542|doi=10.1103/PhysRevB.56.8542|arxiv=cond-mat/9704137|bibcode=1997PhRvB..56.8542B}}
Metals are very commonly described with what can be called
"EAM-like" potentials, i.e. potentials that share
the same functional form as the embedded atom model.
In these potentials, the total potential energy is written
::
where is a so-called embedding function
(not to be confused with the force ) that is a function of the sum of the so-called electron density
.
is a pair potential that usually is purely repulsive. In the original
formulation {{cite journal |author3-link=Murray S. Daw|author1-link=Stephen M. Foiles|author2-link=Michael Baskes | vauthors = Foiles SM, Baskes MI, Daw MS | title = Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys | journal = Physical Review B | volume = 33 | issue = 12 | pages = 7983–7991 | date = June 1986 | pmid = 9938188 | doi = 10.1103/physrevb.33.7983 | bibcode = 1986PhRvB..33.7983F }}{{cite journal | last1=Foiles | first1=S. M. | last2=Baskes | first2=M. I. | last3=Daw | first3=M. S. | title=Erratum: Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys | journal=Physical Review B | volume=37 | issue=17 | date=15 June 1988 | issn=0163-1829 | doi=10.1103/physrevb.37.10378 | pages=10378| doi-access=free }} the electron
density function was obtained
from true atomic electron densities, and the embedding function
was motivated from density-functional theory as the energy needed
to 'embed' an atom into the electron density.
However, many other potentials used for metals share the same functional
form but motivate the terms differently, e.g. based
{{cite journal | last1=Finnis | first1=M. W. | last2=Sinclair | first2=J. E. | title=A simple empirical N-body potential for transition metals | journal=Philosophical Magazine A | volume=50 | issue=1 | year=1984 | issn=0141-8610 | doi=10.1080/01418618408244210 | pages=45–55| bibcode=1984PMagA..50...45F }}{{cite journal | title=Erratum | journal=Philosophical Magazine A | volume=53 | issue=1 | year=1986 | issn=0141-8610 | doi=10.1080/01418618608242815 | pages=161| bibcode=1986PMagA..53..161. | doi-access=free }}
or other motivations
EAM-like potentials are usually implemented as numerical tables.
A collection of tables is available at the interatomic
potential repository at NIST [http://www.ctcms.nist.gov/potentials/]
Covalently bonded materials are often described by
bond order potentials, sometimes also called
Tersoff-like or Brenner-like potentials.
These have in general a form that resembles a pair potential:
::
V_{ij}(r_{ij}) = V_\mathrm{repulsive}(r_{ij}) + b_{ijk} V_\mathrm{attractive}(r_{ij})
where the repulsive and attractive part are simple exponential
functions similar to those in the Morse potential.
However, the strength is modified by the environment of the atom via the term. If implemented without
an explicit angular dependence, these potentials
can be shown to be mathematically equivalent to
some varieties of EAM-like potentials
Thanks to this equivalence, the bond-order potential formalism has been implemented also for many metal-covalent mixed materials.{{cite journal|last1=de Brito Mota|first1=F.|last2=Justo|first2=J. F.|last3=Fazzio|first3=A.|title=Structural properties of amorphous silicon nitride|journal=Phys. Rev. B|date=1998|volume=58|issue=13|page=8323|doi=10.1103/PhysRevB.58.8323|bibcode=1998PhRvB..58.8323D}}
EAM potentials have also been extended to describe covalent bonding by adding angular-dependent terms to the electron density function , in what is called the modified embedded atom method (MEAM).{{cite journal | vauthors = Baskes MI | title = Application of the embedded-atom method to covalent materials: A semiempirical potential for silicon | journal = Physical Review Letters | volume = 59 | issue = 23 | pages = 2666–2669 | date = December 1987 | pmid = 10035617 | doi = 10.1103/PhysRevLett.59.2666 | bibcode = 1987PhRvL..59.2666B }}{{cite journal | vauthors = Baskes MI | title = Modified embedded-atom potentials for cubic materials and impurities | journal = Physical Review B | volume = 46 | issue = 5 | pages = 2727–2742 | date = August 1992 | pmid = 10003959 | doi = 10.1103/PhysRevB.46.2727 | bibcode = 1992PhRvB..46.2727B }}{{Cite journal|last1=Lee|first1=Byeong-Joo|last2=Baskes|first2=M. I.|date=2000-10-01|title=Second nearest-neighbor modified embedded-atom-method potential|journal=Physical Review B|volume=62|issue=13|pages=8564–8567|doi=10.1103/PhysRevB.62.8564|bibcode=2000PhRvB..62.8564L}}
=== Force fields ===
{{main|Force field (chemistry)}}
A force field is the collection of parameters to describe the physical interactions between atoms or physical units (up to ~108) using a given energy expression. The term force field characterizes the collection of parameters for a given interatomic potential (energy function) and is often used within the computational chemistry community.{{cite journal|vauthors=Heinz H, Lin TJ, Mishra RK, Emami FS|date=February 2013|title=Thermodynamically consistent force fields for the assembly of inorganic, organic, and biological nanostructures: the INTERFACE force field|journal=Langmuir|volume=29|issue=6|pages=1754–65|doi=10.1021/la3038846|pmid=23276161}} The force field parameters make the difference between good and poor models. Force fields are used for the simulation of metals, ceramics, molecules, chemistry, and biological systems, covering the entire periodic table and multiphase materials. Today's performance is among the best for solid-state materials,{{cite journal|vauthors=Heinz H, Ramezani-Dakhel H|date=January 2016|title=Simulations of inorganic-bioorganic interfaces to discover new materials: insights, comparisons to experiment, challenges, and opportunities|journal=Chemical Society Reviews|volume=45|issue=2|pages=412–48|doi=10.1039/c5cs00890e|pmid=26750724}}{{Cite journal|last1=Mishra|first1=Ratan K.|last2=Mohamed|first2=Aslam Kunhi|last3=Geissbühler|first3=David|last4=Manzano|first4=Hegoi|last5=Jamil|first5=Tariq|last6=Shahsavari|first6=Rouzbeh|last7=Kalinichev|first7=Andrey G.|last8=Galmarini|first8=Sandra|last9=Tao|first9=Lei|last10=Heinz|first10=Hendrik|last11=Pellenq|first11=Roland|date=December 2017|title=A force field database for cementitious materials including validations, applications and opportunities|journal=Cement and Concrete Research|language=en|volume=102|pages=68–89|doi=10.1016/j.cemconres.2017.09.003|url=https://www.dora.lib4ri.ch/empa/islandora/object/empa%3A15322|doi-access=free}} molecular fluids, and for biomacromolecules,{{cite journal | vauthors = Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA | title = Development and testing of a general amber force field | journal = Journal of Computational Chemistry | volume = 25 | issue = 9 | pages = 1157–74 | date = July 2004 | pmid = 15116359 | doi = 10.1002/jcc.20035 | s2cid = 18734898 | doi-access = free }} whereby biomacromolecules were the primary focus of force fields from the 1970s to the early 2000s. Force fields range from relatively simple and interpretable fixed-bond models (e.g. Interface force field, CHARMM,{{cite journal | vauthors = Huang J, MacKerell AD | title = CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data | journal = Journal of Computational Chemistry | volume = 34 | issue = 25 | pages = 2135–45 | date = September 2013 | pmid = 23832629 | doi = 10.1002/jcc.23354 | pmc = 3800559 }} and COMPASS) to explicitly reactive models with many adjustable fit parameters (e.g. ReaxFF) and machine learning models.
= Non-parametric potentials =
It should first be noted that non-parametric potentials are often referred to as "machine learning" potentials. While the descriptor/mapping forms of non-parametric models are closely related to machine learning in general and their complex nature make machine learning fitting optimizations almost necessary, differentiation is important in that parametric models can also be optimized using machine learning.
Current research in interatomic potentials involves using systematically improvable, non-parametric mathematical forms and increasingly complex machine learning methods. The total energy is then writtenwhere is a mathematical representation of the atomic environment surrounding the atom , known as the descriptor.{{Cite journal|last1=Bartók|first1=Albert P.|last2=Kondor|first2=Risi|last3=Csányi|first3=Gábor|s2cid=118375156|date=2013-05-28|title=On representing chemical environments|journal=Physical Review B|language=en|volume=87|issue=18|pages=184115|doi=10.1103/PhysRevB.87.184115|issn=1098-0121|arxiv=1209.3140|bibcode=2013PhRvB..87r4115B}} is a machine-learning model that provides a prediction for the energy of atom based on the descriptor output. An accurate machine-learning potential requires both a robust descriptor and a suitable machine learning framework. The simplest descriptor is the set of interatomic distances from atom to its neighbours, yielding a machine-learned pair potential. However, more complex many-body descriptors are needed to produce highly accurate potentials. It is also possible to use a linear combination of multiple descriptors with associated machine-learning models.{{Cite journal|last1=Deringer|first1=Volker L.|last2=Csányi|first2=Gábor|s2cid=55190594|date=2017-03-03|title=Machine learning based interatomic potential for amorphous carbon|journal=Physical Review B|language=en|volume=95|issue=9|pages=094203|doi=10.1103/PhysRevB.95.094203|issn=2469-9950|arxiv=1611.03277|bibcode=2017PhRvB..95i4203D}} Potentials have been constructed using a variety of machine-learning methods, descriptors, and mappings, including neural networks,{{cite journal | vauthors = Behler J, Parrinello M | title = Generalized neural-network representation of high-dimensional potential-energy surfaces | journal = Physical Review Letters | volume = 98 | issue = 14 | pages = 146401 | date = April 2007 | pmid = 17501293 | doi = 10.1103/PhysRevLett.98.146401 | bibcode = 2007PhRvL..98n6401B }} Gaussian process regression,{{cite journal | vauthors = Bartók AP, Payne MC, Kondor R, Csányi G | s2cid = 15918457 | title = Gaussian approximation potentials: the accuracy of quantum mechanics, without the electrons | journal = Physical Review Letters | volume = 104 | issue = 13 | pages = 136403 | date = April 2010 | pmid = 20481899 | doi = 10.1103/PhysRevLett.104.136403 | arxiv = 0910.1019 | bibcode = 2010PhRvL.104m6403B }}{{Cite journal|last1=Dragoni|first1=Daniele|last2=Daff|first2=Thomas D.|last3=Csányi|first3=Gábor|last4=Marzari|first4=Nicola|date=2018-01-30|title=Achieving DFT accuracy with a machine-learning interatomic potential: Thermomechanics and defects in bcc ferromagnetic iron|url=https://link.aps.org/doi/10.1103/PhysRevMaterials.2.013808|journal=Physical Review Materials|volume=2|issue=1|pages=013808|doi=10.1103/PhysRevMaterials.2.013808|arxiv=1706.10229 |bibcode=2018PhRvM...2a3808D |hdl=10281/231112|s2cid=119252567 |hdl-access=free}} and linear regression.{{Cite journal|last1=Thompson|first1=A.P.|last2=Swiler|first2=L.P.|last3=Trott|first3=C.R.|last4=Foiles|first4=S.M.|last5=Tucker|first5=G.J.|date=2015-03-15|title=Spectral neighbor analysis method for automated generation of quantum-accurate interatomic potentials|journal=Journal of Computational Physics|language=en|volume=285|pages=316–330|doi=10.1016/j.jcp.2014.12.018|arxiv=1409.3880|bibcode=2015JCoPh.285..316T|doi-access=free}}
A non-parametric potential is most often trained to total energies, forces, and/or stresses obtained from quantum-level calculations, such as density functional theory, as with most modern potentials. However, the accuracy of a machine-learning potential can be converged to be comparable with the underlying quantum calculations, unlike analytical models. Hence, they are in general more accurate than traditional analytical potentials, but they are correspondingly less able to extrapolate. Further, owing to the complexity of the machine-learning model and the descriptors, they are computationally far more expensive than their analytical counterparts.
Non-parametric, machine learned potentials may also be combined with parametric, analytical potentials, for example to include known physics such as the screened Coulomb repulsion,{{Cite journal|last1=Byggmästar|first1=J.|last2=Hamedani|first2=A.|last3=Nordlund|first3=K.|last4=Djurabekova|first4=F.|s2cid=201106123|date=2019-10-17|title=Machine-learning interatomic potential for radiation damage and defects in tungsten|journal=Physical Review B|volume=100|issue=14|pages=144105|doi=10.1103/PhysRevB.100.144105|arxiv=1908.07330|bibcode=2019PhRvB.100n4105B|hdl=10138/306660|hdl-access=free}} or to impose physical constraints on the predictions.{{cite journal | vauthors = Pun GP, Batra R, Ramprasad R, Mishin Y | title = Physically informed artificial neural networks for atomistic modeling of materials | journal = Nature Communications | volume = 10 | issue = 1 | pages = 2339 | date = May 2019 | pmid = 31138813 | pmc = 6538760 | doi = 10.1038/s41467-019-10343-5 | bibcode = 2019NatCo..10.2339P }}
Potential fitting
Since the interatomic potentials are approximations, they by necessity all involve
parameters that need to be adjusted to some reference values. In simple
potentials such as the Lennard-Jones and Morse ones, the parameters are interpretable and can be set to match e.g. the equilibrium bond length and bond strength
of a dimer molecule or the surface energy of a solid
.{{Cite journal|last1=Heinz|first1=Hendrik|last2=Vaia|first2=R. A.|last3=Farmer|first3=B. L.|last4=Naik|first4=R. R.|date=2008-10-09|title=Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12−6 and 9−6 Lennard-Jones Potentials|journal=The Journal of Physical Chemistry C|volume=112|issue=44|pages=17281–17290|doi=10.1021/jp801931d|issn=1932-7447}}{{Cite journal|last1=Liu|first1=Juan|last2=Tennessen|first2=Emrys|last3=Miao|first3=Jianwei|last4=Huang|first4=Yu|last5=Rondinelli|first5=James M.|last6=Heinz|first6=Hendrik|date=2018-05-31|title=Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations|journal=The Journal of Physical Chemistry C|volume=122|issue=26|pages=14996–15009|doi=10.1021/acs.jpcc.8b01891|s2cid=51855788 |issn=1932-7447}} Lennard-Jones potential can typically describe the lattice parameters, surface energies, and approximate mechanical properties.{{cite journal | vauthors = Nathanson M, Kanhaiya K, Pryor A, Miao J, Heinz H | title = Atomic-Scale Structure and Stress Release Mechanism in Core-Shell Nanoparticles | journal = ACS Nano | volume = 12 | issue = 12 | pages = 12296–12304 | date = December 2018 | pmid = 30457827 | doi = 10.1021/acsnano.8b06118 | s2cid = 53764446 }} Many-body
potentials often contain tens or even hundreds of adjustable parameters with limited interpretability and no compatibility with common interatomic potentials for bonded molecules.
Such parameter sets can be fit to a larger set of experimental data, or materials
properties derived from less reliable data such as from density-functional theory.{{Cite journal|last1=Ruiz|first1=Victor G.|last2=Liu|first2=Wei|last3=Tkatchenko|first3=Alexandre|date=2016-01-15|title=Density-functional theory with screened van der Waals interactions applied to atomic and molecular adsorbates on close-packed and non-close-packed surfaces|journal=Physical Review B|volume=93|issue=3|page=035118|doi=10.1103/physrevb.93.035118|bibcode=2016PhRvB..93c5118R|hdl=11858/00-001M-0000-0029-3035-8|issn=2469-9950|hdl-access=free}}{{cite journal | vauthors = Ruiz VG, Liu W, Zojer E, Scheffler M, Tkatchenko A | title = Density-functional theory with screened van der Waals interactions for the modeling of hybrid inorganic-organic systems | journal = Physical Review Letters | volume = 108 | issue = 14 | pages = 146103 | date = April 2012 | pmid = 22540809 | doi = 10.1103/physrevlett.108.146103 | bibcode = 2012PhRvL.108n6103R | doi-access = free | hdl = 11858/00-001M-0000-000F-C6EA-3 | hdl-access = free }} For solids, a many-body potential
can often describe the lattice constant of the equilibrium crystal structure, the cohesive energy, and linear elastic constants, as well as basic point defect properties of all the elements and stable compounds well, although deviations in surface energies often exceed 50%.
Non-parametric potentials in turn contain hundreds or even thousands of independent parameters to fit. For any but the simplest model forms, sophisticated optimization and machine learning methods are necessary for useful potentials.
The aim of most potential functions and fitting is to make the potential
transferable, i.e. that it can describe materials properties that are clearly
different from those it was fitted to (for examples of potentials explicitly aiming for this,
see e.g.{{Cite journal|last1=Mishra|first1=Ratan K.|last2=Flatt|first2=Robert J.|last3=Heinz|first3=Hendrik|date=2013-04-19|title=Force Field for Tricalcium Silicate and Insight into Nanoscale Properties: Cleavage, Initial Hydration, and Adsorption of Organic Molecules|journal=The Journal of Physical Chemistry C|volume=117|issue=20|pages=10417–10432|doi=10.1021/jp312815g|issn=1932-7447}}{{Cite journal|last1=Ramezani-Dakhel|first1=Hadi|last2=Ruan|first2=Lingyan|last3=Huang|first3=Yu|last4=Heinz|first4=Hendrik|date=2015-01-21|title=Molecular Mechanism of Specific Recognition of Cubic Pt Nanocrystals by Peptides and of the Concentration-Dependent Formation from Seed Crystals|journal=Advanced Functional Materials|volume=25|issue=9|pages=1374–1384|doi=10.1002/adfm.201404136|s2cid=94001655 |issn=1616-301X}}{{cite journal | vauthors = Chen J, Zhu E, Liu J, Zhang S, Lin Z, Duan X, Heinz H, Huang Y, De Yoreo JJ | s2cid = 54456982 | display-authors = 6 | title = Building two-dimensional materials one row at a time: Avoiding the nucleation barrier | journal = Science | volume = 362 | issue = 6419 | pages = 1135–1139 | date = December 2018 | pmid = 30523105 | doi = 10.1126/science.aau4146 | bibcode = 2018Sci...362.1135C | doi-access = free }}{{cite journal | last1=Swamy | first1=Varghese | last2=Gale | first2=Julian D. | title=Transferable variable-charge interatomic potential for atomistic simulation of titanium oxides | journal=Physical Review B | volume=62 | issue=9 | date=1 August 2000 | issn=0163-1829 | doi=10.1103/physrevb.62.5406 | pages=5406–5412| bibcode=2000PhRvB..62.5406S }}{{cite journal | last1=Aguado | first1=Andrés | last2=Bernasconi | first2=Leonardo | last3=Madden | first3=Paul A. | title=A transferable interatomic potential for MgO from ab initio molecular dynamics | journal=Chemical Physics Letters | volume=356 | issue=5–6 | year=2002 | issn=0009-2614 | doi=10.1016/s0009-2614(02)00326-3 | pages=437–444| bibcode=2002CPL...356..437A }}). Key aspects here are the correct representation of chemical bonding, validation of structures and energies, as well as interpretability of all parameters. Full transferability and interpretability is reached with the Interface force field (IFF). An example of partial transferability, a review of interatomic potentials
of Si describes that Stillinger-Weber and Tersoff III potentials for Si can describe several (but not all) materials properties they were not fitted to.
The NIST interatomic potential repository provides a collection of fitted interatomic potentials, either as fitted parameter values or numerical
tables of the potential functions.{{cite web|url=http://www.ctcms.nist.gov/potentials/|title=Interatomic Potentials Repository Project|first=U.S. Department of Commerce, National Institute of Standards and|last=Technology|website=www.ctcms.nist.gov}} The OpenKIM {{cite web|url=https://openkim.org/|title=Open Knowledgebase of Interatomic Models (OpenKIM)}} project also provides a repository of fitted potentials, along with collections of validation tests and a software framework for promoting reproducibility in molecular simulations using interatomic potentials.
Machine-learned interatomic potentials
{{Main|Machine learning potential}}
Since the 1990s, machine learning programs have been employed to construct interatomic potentials, mapping atomic structures to their potential energies. These are generally referred to as 'machine learning potentials' (MLPs){{Cite journal |last1=Behler |first1=Jörg |last2=Csányi |first2=Gábor |date=2021-07-19 |title=Machine learning potentials for extended systems: a perspective |journal=The European Physical Journal B |language=en |volume=94 |issue=7 |pages=142 |doi=10.1140/epjb/s10051-021-00156-1 |bibcode=2021EPJB...94..142B |issn=1434-6036|doi-access=free }} or as 'machine-learned interatomic potentials' (MLIPs).{{Cite journal |last1=Rosenbrock |first1=Conrad W. |last2=Gubaev |first2=Konstantin |last3=Shapeev |first3=Alexander V. |last4=Pártay |first4=Livia B. |last5=Bernstein |first5=Noam |last6=Csányi |first6=Gábor |last7=Hart |first7=Gus L. W. |date=2021-01-29 |title=Machine-learned interatomic potentials for alloys and alloy phase diagrams |url=https://www.nature.com/articles/s41524-020-00477-2 |journal=npj Computational Materials |language=en |volume=7 |issue=1 |page=24 |doi=10.1038/s41524-020-00477-2 |bibcode=2021npjCM...7...24R |issn=2057-3960|arxiv=1906.07816 }} Such machine learning potentials help fill the gap between highly accurate but computationally intensive simulations like density functional theory and computationally lighter, but much less precise, empirical potentials. Early neural networks showed promise, but their inability to systematically account for interatomic energy interactions limited their applications to smaller, low-dimensional systems, keeping them largely within the confines of academia. However, with continuous advancements in artificial intelligence technology, machine learning methods have become significantly more accurate, increasing the use of machine learning in the field.{{cite journal|last1=Kocer|last2=Ko|last3=Behler|first1=Emir|first2=Tsz Wai|first3=Jorg|journal=Annual Review of Physical Chemistry|title=Neural Network Potentials: A Concise Overview of Methods|date=2022|volume=73|pages=163–86|doi=10.1146/annurev-physchem-082720-034254 |pmid=34982580 |arxiv=2107.03727 |bibcode=2022ARPC...73..163K |s2cid=235765258 }}{{cite journal|last1=Blank|first1=TB|last2=Brown|first2=SD|last3=Calhoun|last4=Doren|first4=DJ|first3=AW|date=1995|title=Neural network models of potential energy surfaces|journal=The Journal of Chemical Physics|volume=103|number=10|pages=4129–37|doi=10.1063/1.469597 |bibcode=1995JChPh.103.4129B }}
Modern neural networks have revolutionized the construction of highly accurate and computationally light potentials by integrating theoretical understanding of materials science into their architectures and preprocessing. Almost all are local, accounting for all interactions between an atom and its neighbor up to some cutoff radius. These neural networks usually intake atomic coordinates and output potential energies. Atomic coordinates are sometimes transformed with atom-centered symmetry functions or pair symmetry functions before being fed into neural networks. Encoding symmetry has been pivotal in enhancing machine learning potentials by drastically constraining the neural networks' search space.{{cite journal|last1=Behler|first1=J|last2=Parrinello|first2=M|title=Generalized neural-network representation of high-dimensional potential-energy surfaces|date=2007|journal=Physical Review Letters|volume=148|issue=14|page=146401|doi=10.1103/PhysRevLett.98.146401|pmid=17501293|bibcode=2007PhRvL..98n6401B}}
Conversely, message-passing neural networks (MPNNs), a form of graph neural networks, learn their own descriptors and symmetry encodings. They treat molecules as three-dimensional graphs and iteratively update each atom's feature vectors as information about neighboring atoms is processed through message functions and convolutions. These feature vectors are then used to directly predict the final potentials. In 2017, the first-ever MPNN model, a deep tensor neural network, was used to calculate the properties of small organic molecules.{{cite journal|last1=Schutt|first1=KT|last2=Arbabzadah|first2=F|last3=Chmiela|first3=S|last4=Muller|first4=KR|last5=Tkatchenko|first5=A|date=2017|title=Quantum-chemical insights from deep tensor neural networks|journal=Nature Communications|volume=8 |page=13890 |doi=10.1038/ncomms13890 |pmid=28067221 |pmc=5228054 |arxiv=1609.08259 |bibcode=2017NatCo...813890S }}{{cite journal|journal=Nature Communications|title=Towards universal neural network potential for material discovery applicable to arbitrary combinations of 45 elements|last1=Takamoto|first1=So|last2=Shinagawa|first2=Chikashi|last3=Motoki|first3=Daisuke|last4=Nakago|first4=Kosuke|volume=13|date=May 30, 2022|issue=1 |page=2991 |doi=10.1038/s41467-022-30687-9 |pmid=35637178 |pmc=9151783 |arxiv=2106.14583 |bibcode=2022NatCo..13.2991T }}
Another class of machine-learned interatomic potential is the Gaussian approximation potential (GAP),{{Cite journal |last=Anonymous |date=2010-04-05 |title=Modeling sans electrons |url=https://physics.aps.org/articles/v3/s48 |journal=Physics |language=en |volume=3 |issue=13 |pages=s48 |doi=10.1103/PhysRevLett.104.136403|pmid=20481899 |bibcode=2010PhRvL.104m6403B |arxiv=0910.1019 }}{{Cite journal |last1=Bartók |first1=Albert P. |last2=Payne |first2=Mike C. |last3=Kondor |first3=Risi |last4=Csányi |first4=Gábor |date=2010-04-01 |title=Gaussian Approximation Potentials: The Accuracy of Quantum Mechanics, without the Electrons |url=https://link.aps.org/doi/10.1103/PhysRevLett.104.136403 |journal=Physical Review Letters |volume=104 |issue=13 |pages=136403 |doi=10.1103/PhysRevLett.104.136403|pmid=20481899 |bibcode=2010PhRvL.104m6403B |arxiv=0910.1019 }}{{Cite journal |last1=Bartók |first1=Albert P. |last2=De |first2=Sandip |last3=Poelking |first3=Carl |last4=Bernstein |first4=Noam |last5=Kermode |first5=James R. |last6=Csányi |first6=Gábor |last7=Ceriotti |first7=Michele |date=December 2017 |title=Machine learning unifies the modeling of materials and molecules |journal=Science Advances |language=en |volume=3 |issue=12 |pages=e1701816 |doi=10.1126/sciadv.1701816 |issn=2375-2548 |pmc=5729016 |pmid=29242828|arxiv=1706.00179 |bibcode=2017SciA....3E1816B }} which combines compact descriptors of local atomic environments{{Cite journal |last1=Bartók |first1=Albert P. |last2=Kondor |first2=Risi |last3=Csányi |first3=Gábor |date=2013-05-28 |title=On representing chemical environments |url=https://link.aps.org/doi/10.1103/PhysRevB.87.184115 |journal=Physical Review B |volume=87 |issue=18 |pages=184115 |doi=10.1103/PhysRevB.87.184115|arxiv=1209.3140 |bibcode=2013PhRvB..87r4115B }} with Gaussian process regression{{Cite book |last1=Rasmussen |first1=Carl Edward |title=Gaussian processes for machine learning |last2=Williams |first2=Christopher K. I. |date=2008 |publisher=MIT Press |isbn=978-0-262-18253-9 |edition=3. print |series=Adaptive computation and machine learning |location=Cambridge, Mass.}} to machine learn the potential energy surface of a given system. To date, the GAP framework has been used to successfully develop a number of MLIPs for various systems, including for elemental systems such as Carbon{{cite journal | last1=Rowe | first1=Patrick | last2=Deringer | first2=Volker L. | last3=Gasparotto | first3=Piero | last4=Csányi | first4=Gábor | last5=Michaelides | first5=Angelos | title=An accurate and transferable machine learning potential for carbon | journal=The Journal of Chemical Physics | volume=153 | issue=3 | date=2020-07-21 | page=034702 | issn=0021-9606 | doi=10.1063/5.0005084 | doi-access=free | pmid=32716159 | arxiv=2006.13655 }}{{Cite journal |last1=Deringer |first1=Volker L. |last2=Csányi |first2=Gábor |date=2017-03-03 |title=Machine learning based interatomic potential for amorphous carbon |url=https://link.aps.org/doi/10.1103/PhysRevB.95.094203 |journal=Physical Review B |volume=95 |issue=9 |pages=094203 |doi=10.1103/PhysRevB.95.094203|arxiv=1611.03277 |bibcode=2017PhRvB..95i4203D }} Silicon,{{Cite journal |last1=Bartók |first1=Albert P. |last2=Kermode |first2=James |last3=Bernstein |first3=Noam |last4=Csányi |first4=Gábor |date=2018-12-14 |title=Machine Learning a General-Purpose Interatomic Potential for Silicon |url=https://link.aps.org/doi/10.1103/PhysRevX.8.041048 |journal=Physical Review X |volume=8 |issue=4 |pages=041048 |doi=10.1103/PhysRevX.8.041048|arxiv=1805.01568 |bibcode=2018PhRvX...8d1048B }} and Tungsten,{{Cite journal |last1=Szlachta |first1=Wojciech J. |last2=Bartók |first2=Albert P. |last3=Csányi |first3=Gábor |date=2014-09-24 |title=Accuracy and transferability of Gaussian approximation potential models for tungsten |url=https://link.aps.org/doi/10.1103/PhysRevB.90.104108 |journal=Physical Review B |volume=90 |issue=10 |pages=104108 |doi=10.1103/PhysRevB.90.104108|bibcode=2014PhRvB..90j4108S }} as well as for multicomponent systems such as Ge2Sb2Te5{{Cite journal |last1=Mocanu |first1=Felix C. |last2=Konstantinou |first2=Konstantinos |last3=Lee |first3=Tae Hoon |last4=Bernstein |first4=Noam |last5=Deringer |first5=Volker L. |last6=Csányi |first6=Gábor |last7=Elliott |first7=Stephen R. |date=2018-09-27 |title=Modeling the Phase-Change Memory Material, Ge 2 Sb 2 Te 5 , with a Machine-Learned Interatomic Potential |url=https://pubs.acs.org/doi/10.1021/acs.jpcb.8b06476 |journal=The Journal of Physical Chemistry B |language=en |volume=122 |issue=38 |pages=8998–9006 |doi=10.1021/acs.jpcb.8b06476 |pmid=30173522 |issn=1520-6106|url-access=subscription }} and austenitic stainless steel, Fe7Cr2Ni.{{Cite journal |last1=Shenoy |first1=Lakshmi |last2=Woodgate |first2=Christopher D. |last3=Staunton |first3=Julie B. |last4=Bartók |first4=Albert P. |last5=Becquart |first5=Charlotte S. |last6=Domain |first6=Christophe |last7=Kermode |first7=James R. |date=2024-03-22 |title=
Reliability of interatomic potentials
Classical interatomic potentials often exceed the accuracy of simplified quantum mechanical methods such as density functional theory at a million times lower computational cost. The use of interatomic potentials is recommended for the simulation of nanomaterials, biomacromolecules, and electrolytes from atoms up to millions of atoms at the 100 nm scale and beyond. As a limitation, electron densities and quantum processes at the local scale of hundreds of atoms are not included. When of interest, higher level quantum chemistry methods can be locally used.{{cite journal | vauthors = Acevedo O, Jorgensen WL | title = Advances in quantum and molecular mechanical (QM/MM) simulations for organic and enzymatic reactions | journal = Accounts of Chemical Research | volume = 43 | issue = 1 | pages = 142–51 | date = January 2010 | pmid = 19728702 | doi = 10.1021/ar900171c | pmc = 2880334 }}
The robustness of a model at different conditions other than those used in the fitting process is often measured in terms of transferability of the potential.
See also
References
{{Reflist|colwidth=30em}}
External links
- [http://www.ctcms.nist.gov/potentials/ NIST interatomic potential repository]
- [https://www.ctcms.nist.gov/~knc6/periodic.html NIST JARVIS-FF]
- [https://openkim.org/ Open Knowledgebase of Interatomic Models (OpenKIM)]
Category:Condensed matter physics