isorenieratene

Isorenieratene has the chemical formula C₄₀H₄₈.{{Cite journal |last=Yamaguchi |first=Masaru |date=1957-09-04 |title=Chemical Constitution of Isorenieratene |journal=Bulletin of the Chemical Society of Japan |language=en |volume=31 |issue=1 |pages=51–55 |doi=10.1246/bcsj.31.51 |issn=0009-2673|doi-access=free }} It is a diaromatic carotenoid with a regularly-linked isoprenoid chain, except for a single tail-to-tail linkage in the middle of the molecule. Isorenieratene has a characteristic 1-alkyl-2,3,6-trimethyl substitution pattern on the aromatic rings, which helps identify the molecule. The nine conjugated double bonds on the isoprenoid backbone are all in the trans configuration and make the molecule highly reactive with reduced inorganic sulfur species.{{Cite journal |last1=Koopmans |first1=Martin P. |last2=Köster |first2=Jürgen |last3=Van Kaam-Peters |first3=Heidy M. E. |last4=Kenig |first4=Fabien |last5=Schouten |first5=Stefan |last6=Hartgers |first6=Walter A. |last7=de Leeuw |first7=Jan W. |last8=Sinninghe Damsté |first8=Jaap S. |date=1996-11-01 |title=Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia |url=https://www.sciencedirect.com/science/article/pii/S0016703796002384 |journal=Geochimica et Cosmochimica Acta |language=en |volume=60 |issue=22 |pages=4467–4496 |doi=10.1016/S0016-7037(96)00238-4 |bibcode=1996GeCoA..60.4467K |hdl=1874/4280 |s2cid=95423218 |issn=0016-7037|hdl-access=free }} The molecule is hydrophobic and insoluble in water, like most other carotenoids. Isorenieratene is generally non-toxic.

Isorenieratene was first discovered when isolated from the orange-colored sponge Reniera japonica.{{Cite journal |last=Yamaguchi |first=Masaru |date=1957-09-04 |title=Chemical Constitution of Isorenieratene |journal=Bulletin of the Chemical Society of Japan |language=en |volume=31 |issue=1 |pages=51–55 |doi=10.1246/bcsj.31.51 |issn=0009-2673|doi-access=free }} Marine sponges are brilliantly colored due to the occurrence of several carotenoids and their association with symbionts such as bacteria or algae. Therefore, isorenieratene in sponges is assumed to originate from the symbiosis between sponges and green sulfur bacteria (Chlorobiaceae).{{Cite journal |last1=Genç |first1=Yasin |last2=Bardakci |first2=Hilal |last3=Yücel |first3=Çiğdem |last4=Karatoprak |first4=Gökçe Şeker |last5=Küpeli Akkol |first5=Esra |last6=Hakan Barak |first6=Timur |last7=Sobarzo-Sánchez |first7=Eduardo |date=2020-06-27 |title=Oxidative Stress and Marine Carotenoids: Application by Using Nanoformulations |journal=Marine Drugs |language=en |volume=18 |issue=8 |pages=423 |doi=10.3390/md18080423 |pmid=32823595 |pmc=7459739 |issn=1660-3397 |doi-access=free }}

Green sulfur bacteria live in euxinic environments, often at the chemocline, where the light flux is present but low. To increase their metabolic efficiency, they have developed a chlorosome, a membrane-bound antenna with bacteriochlorophyll c, d, or e.{{Cite journal |last1=Maresca |first1=Julia A. |last2=Romberger |first2=Steven P. |last3=Bryant |first3=Donald A. |date=2008-05-28 |title=Isorenieratene Biosynthesis in Green Sulfur Bacteria Requires the Cooperative Actions of Two Carotenoid Cyclases |journal=Journal of Bacteriology |language=en |volume=190 |issue=19 |pages=6384–6391 |doi=10.1128/JB.00758-08 |issn=0021-9193 |pmc=2565998 |pmid=18676669}} The brown-colored strain of Chlorobiaceae has bacteriochlorophyll e in its chlorosome, which primarily makes isorenieratene. It is speculated that isorenieratene and other related carotenoids are adaptations that help organisms live under low-light conditions. Green sulfur bacteria fix carbon through the reverse tricarboxylic acid cycle (TCA), resulting in the produced biomass, including isorenieratene, being anomalously enriched in carbon-13 (¹³C) compared to other algal biomass by about 15 per mil.{{Cite journal |last1=Koopmans |first1=Martin P. |last2=Köster |first2=Jürgen |last3=Van Kaam-Peters |first3=Heidy M. E. |last4=Kenig |first4=Fabien |last5=Schouten |first5=Stefan |last6=Hartgers |first6=Walter A. |last7=de Leeuw |first7=Jan W. |last8=Sinninghe Damsté |first8=Jaap S. |date=1996-11-01 |title=Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia |url=https://www.sciencedirect.com/science/article/pii/S0016703796002384 |journal=Geochimica et Cosmochimica Acta |language=en |volume=60 |issue=22 |pages=4467–4496 |doi=10.1016/S0016-7037(96)00238-4 |bibcode=1996GeCoA..60.4467K |hdl=1874/4280 |s2cid=95423218 |issn=0016-7037|hdl-access=free }} δ¹³C of green sulfur bacteria biomass ranges between –9 and –21 per mil. Isorenieratene is relatively uncommon but of great significance when encountered. It is a powerful proxy for euxinic conditions in the photic zone both today and in the geologic record.

File:Black_Sea_2_July_2019_-_48182294992.jpg

The combination of conditions in which green sulfur bacteria live and, thereby, where isorenieratene is found are limited today. Most of these locations are restricted water basins with highly stratified waters, allowing for anoxia development in the lower layers and H₂S accumulation. The Black Sea is one such water basin where the hydrogen sulfide interface, or the chemocline, has moved up in the photic zone, and high concentrations of green sulfur bacteria and isorenieratene are found.{{Cite journal |last1=Marschall |first1=Evelyn |last2=Jogler |first2=Mareike |last3=Henßge |first3=Uta |last4=Overmann |first4=Jörg |date=2010-03-09 |title=Large-scale distribution and activity patterns of an extremely low-light-adapted population of green sulfur bacteria in the Black Sea: Green sulfur bacteria in the Black Sea |url=https://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2010.02178.x |journal=Environmental Microbiology |language=en |volume=12 |issue=5 |pages=1348–1362 |doi=10.1111/j.1462-2920.2010.02178.x|pmid=20236170 |url-access=subscription }} Other modern-day environments include meromictic lakes, restricted fjords, and some marine settings. Green sulfur bacteria are found to play a role in coral ecosystems and have been documented to live on coral and sponges as possible symbionts.{{Cite journal |last1=Yang |first1=Shan-Hua |last2=Lee |first2=Sonny T. M. |last3=Huang |first3=Chang-Rung |last4=Tseng |first4=Ching-Hung |last5=Chiang |first5=Pei-Wen |last6=Chen |first6=Chung-Pin |last7=Chen |first7=Hsing-Ju |last8=Tang |first8=Sen-Lin |date=2016-02-26 |title=Prevalence of potential nitrogen-fixing, green sulfur bacteria in the skeleton of reef-building coral Isopora palifera: Endolithic bacteria in coral skeletons |journal=Limnology and Oceanography |language=en |volume=61 |issue=3 |pages=1078–1086 |doi=10.1002/lno.10277|s2cid=87463811 |doi-access=free }}

Several cases have been found where green sulfur bacteria with bacteriochlorophyll e are abundant, but no isorenieratene was documented. Green sulfur bacteria were found to live near a deep-sea hydrothermal vent off the coast of Mexico;{{Cite journal |last1=Beatty |first1=J. Thomas |last2=Overmann |first2=Jörg |last3=Lince |first3=Michael T. |last4=Manske |first4=Ann K. |last5=Lang |first5=Andrew S. |last6=Blankenship |first6=Robert E. |last7=Van Dover |first7=Cindy L. |last8=Martinson |first8=Tracey A. |last9=Plumley |first9=F. Gerald |date=2005-06-28 |title=An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent |journal=Proceedings of the National Academy of Sciences |language=en |volume=102 |issue=26 |pages=9306–9310 |doi=10.1073/pnas.0503674102 |issn=0027-8424 |pmc=1166624 |pmid=15967984 |bibcode=2005PNAS..102.9306B |doi-access=free }} however, the bacteria are no longer doing photosynthesis at this depth, and no isorenieratene was isolated. In Fayetteville Green Lake (New York), green sulfur bacteria and bacteriochlorophyll e were abundant below the chemocline, yet the sediments lacked isorenieratene.{{Cite journal |last1=Meyer |first1=K. M. |last2=Macalady |first2=J. L. |last3=Fulton |first3=J. M. |last4=Kump |first4=L. R. |last5=Schaperdoth |first5=I. |last6=Freeman |first6=K. H. |date=2011-06-20 |title=Carotenoid biomarkers as an imperfect reflection of the anoxygenic phototrophic community in meromictic Fayetteville Green Lake: Biomarkers of anoxygenic phototrophs |url=https://onlinelibrary.wiley.com/doi/10.1111/j.1472-4669.2011.00285.x |journal=Geobiology |language=en |volume=9 |issue=4 |pages=321–329 |doi=10.1111/j.1472-4669.2011.00285.x|pmid=21682840 |s2cid=19668364 |url-access=subscription }} These unexpected absences of isorenieratene call for continued exploration of the microbial ecology of biomarker production in modern environments.

Isorenieratene is generally poorly-preserved because its structure is susceptible to alteration and degradation. Upon diagenesis and catagenesis, isorenieratene may be transformed and produce various related products that still indicate photic zone euxinia in the depositional environment.{{Cite journal |last1=Koopmans |first1=Martin P. |last2=Köster |first2=Jürgen |last3=Van Kaam-Peters |first3=Heidy M. E. |last4=Kenig |first4=Fabien |last5=Schouten |first5=Stefan |last6=Hartgers |first6=Walter A. |last7=de Leeuw |first7=Jan W. |last8=Sinninghe Damsté |first8=Jaap S. |date=1996-11-01 |title=Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia |url=https://www.sciencedirect.com/science/article/pii/S0016703796002384 |journal=Geochimica et Cosmochimica Acta |language=en |volume=60 |issue=22 |pages=4467–4496 |doi=10.1016/S0016-7037(96)00238-4 |bibcode=1996GeCoA..60.4467K |hdl=1874/4280 |s2cid=95423218 |issn=0016-7037|hdl-access=free }} The two main transformation processes are the saturation of double bonds to form isorenieratane and the rupture of the carbon chain resulting in smaller molecular fragments. Other alterations include sulphurization, cyclization, and aromatization.

File:Timeline_of_euxinia_in_ancient_oceans.png

While euxinic conditions are rare today, In the early history of the Earth, these conditions were thought to be present in all oceans at depths of about 100 m (330 ft). The detection of isorenieratene and green sulfur bacteria in the mid-Proterozoic has been used as evidence for the long-term euxinic conditions remaining in oceans after the Great Oxygenation Event. For example, the 1.64-Gyr-old Barney Creek Formation in northern Australia hosts many biomarkers, including isorenieratene, that signify that these rocks were deposited in a marine basin with anoxic, sulphidic, and highly-stratified deep waters with colonies of green and purple sulfur bacteria.{{Cite journal |last1=Brocks |first1=Jochen J. |last2=Love |first2=Gordon D. |last3=Summons |first3=Roger E. |last4=Knoll |first4=Andrew H. |last5=Logan |first5=Graham A. |last6=Bowden |first6=Stephen A. |date=2005-10-06 |title=Biomarker evidence for green and purple sulphur bacteria in a stratified Palaeoproterozoic sea |url=https://www.nature.com/articles/nature04068 |journal=Nature |language=en |volume=437 |issue=7060 |pages=866–870 |doi=10.1038/nature04068 |pmid=16208367 |bibcode=2005Natur.437..866B |s2cid=4427285 |issn=1476-4687|url-access=subscription }}

Isorenieratene derivatives have been identified in sedimentary rocks throughout the Paleozoic and Mesozoic, signifying that anoxygenic photosynthesis was a more common process in the past.{{Cite journal |last1=Koopmans |first1=Martin P. |last2=Köster |first2=Jürgen |last3=Van Kaam-Peters |first3=Heidy M. E. |last4=Kenig |first4=Fabien |last5=Schouten |first5=Stefan |last6=Hartgers |first6=Walter A. |last7=de Leeuw |first7=Jan W. |last8=Sinninghe Damsté |first8=Jaap S. |date=1996-11-01 |title=Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia |url=https://www.sciencedirect.com/science/article/pii/S0016703796002384 |journal=Geochimica et Cosmochimica Acta |language=en |volume=60 |issue=22 |pages=4467–4496 |doi=10.1016/S0016-7037(96)00238-4 |bibcode=1996GeCoA..60.4467K |hdl=1874/4280 |s2cid=95423218 |issn=0016-7037|hdl-access=free }} Isorenieratene derivatives have also been isolated from many petroleum source rocks, suggesting euxinic conditions and anoxia are favorable for preserving organic matter, leading to forming of petroleum reservoirs. Additionally, the detection of isorenieratene derivatives during mass extinctions signifies that euxinic conditions may be common at such events. For example, the isolation of isorenieratene from rock units deposited during the Permian/Triassic Mass extinction, the deadliest mass extinction on Earth, was used as evidence for several pulses of widespread photic zone euxinia leading up to and during the extinction event.{{Cite journal |last1=Nabbefeld |first1=Birgit |last2=Grice |first2=Kliti |last3=Twitchett |first3=Richard J. |last4=Summons |first4=Roger E. |last5=Hays |first5=Lindsay |last6=Böttcher |first6=Michael E. |last7=Asif |first7=Muhammad |date=2010-03-01 |title=An integrated biomarker, isotopic and palaeoenvironmental study through the Late Permian event at Lusitaniadalen, Spitsbergen |url=https://www.sciencedirect.com/science/article/pii/S0012821X10000178 |journal=Earth and Planetary Science Letters |language=en |volume=291 |issue=1 |pages=84–96 |doi=10.1016/j.epsl.2009.12.053 |bibcode=2010E&PSL.291...84N |issn=0012-821X|url-access=subscription }}

• Carotenoids
• Biomarker
• Green Sulfur Bacteria
• Euxinia

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Category:Carotenoids

Category:Biomarkers