refuge (ecology)

Coral reefs provide the most dramatic demonstration of the ecological effects of refuges.{{cite journal|last1=Gratwicke|first1=B.|last2=Speight|first2=M. R.|title=The relationship between fish species richness, abundance and habitat complexity in a range of shallow tropical marine habitats|journal=Journal of Fish Biology|volume=66|issue=3|year=2005|pages=650–667|issn=0022-1112|doi=10.1111/j.0022-1112.2005.00629.x|bibcode=2005JFBio..66..650G }}{{cite journal|last1=Fontaneto|first1=Diego|last2=Sanciangco|first2=Jonnell C.|last3=Carpenter|first3=Kent E.|last4=Etnoyer|first4=Peter J.|last5=Moretzsohn|first5=Fabio|title=Habitat Availability and Heterogeneity and the Indo-Pacific Warm Pool as Predictors of Marine Species Richness in the Tropical Indo-Pacific|journal=PLOS ONE|volume=8|issue=2|year=2013|pages=e56245|issn=1932-6203|doi=10.1371/journal.pone.0056245|pmid=23457533|pmc=3574161|bibcode=2013PLoSO...856245S|doi-access=free}} Refuge-rich coral reefs contain a full 25% of ocean species, even though such reefs make up just 0.1% of the ocean's surface area.{{cite journal |doi=10.1007/s003380050078 |title=New estimates of global and regional coral reef areas |journal=Coral Reefs |volume=16 |issue=4 |pages=225–30 |year=1997 |last1=Spalding |first1=M. D |last2=Grenfell |first2=A. M |s2cid=46114284 }}Spalding, Mark, Corinna Ravilious, and Edmund Green (2001). World Atlas of Coral Reefs. Berkeley, CA: University of California Press and UNEP/WCMC {{ISBN|0520232550}}.{{page needed|date=November 2017}}Mulhall, M. (Spring 2009) [http://www.law.duke.edu/shell/cite.pl?19+Duke+Envtl.+L.+&+Pol%27y+F.+321+pdf Saving rainforests of the sea: An analysis of international efforts to conserve coral reefs] Duke Environmental Law and Policy Forum 19:321–351.[http://coralreef.noaa.gov/aboutcorals/coral101/corallocations/ Where are Corals Found?] NOAA. Reviewed: 13 May 2011. Retrieved: 24 March 2015. On the other hand, in the sunlight-illuminated open ocean just offshore, there are no places to hide from predation, and both diversity and quantities of organisms per unit area is much lower.{{cite book|author1=Allen, Larry G. |author2=Pondella, Daniel J. |author3=Horn, Michael H. |title=The Ecology of Marine Fishes: California and Adjacent Waters|url=https://books.google.com/books?id=XQMmDQAAQBAJ&pg=PA443 |year=2006 |publisher=University of California Press|isbn=978-0-520-24653-9 |page=443}} Additionally, coral reefs enhance non-local diversity by providing spawning grounds and a refuge habitat for juvenile fishes that will live in the open ocean as adults.{{cite book|author=Roberts, J. Murray|title=Cold-Water Corals: The Biology and Geology of Deep-Sea Coral Habitats |url=https://books.google.com/books?id=L6X6UW7ZszIC&pg=PA163 |year=2009 |publisher=Cambridge University Press |isbn=978-0-521-88485-3 |page=163}}

Rainforest species diversity is also in large part the result of diverse and numerous physical refuges.{{cite journal|last1=Ritchie|first1=Euan G.|last2=Johnson|first2=Christopher N.|title=Predator interactions, mesopredator release and biodiversity conservation|journal=Ecology Letters|volume=12|issue=9|year=2009|pages=982–998|issn=1461-023X|doi=10.1111/j.1461-0248.2009.01347.x|pmid=19614756|bibcode=2009EcolL..12..982R |doi-access=free|hdl=10536/DRO/DU:30039763|hdl-access=free}}

Prey animals typically maintain larger populations when they have a place to physically hide from predation. For example, rats maintain a higher population density if the rats have refuges such as tall grass, allowing them to hide from predators such as owls and cats.{{cite thesis |type=PhD| last1=Lambert|first1=Mark|title=Control Of Norway Rats In The Agricultural Environment: Alternatives To Rodenticide Use|url=https://lra.le.ac.uk/bitstream/2381/27745/1/2003LambertMSPhD.pdf|publisher=University of Leicester|pages=85–103|language=en|format=Thesis|date=September 2003}} Sea birds often have nesting colonies on islands but not on nearby, apparently suitable, mainland sites. The islands lack the mammalian predators found on the mainland, such as cats, dogs, and rats, all of which typically decimate seabird colonies.{{cite book|author=Hoagland, Porter |title=Marine Policy & Economics|url=https://books.google.com/books?id=dqzXwFsOFMcC&pg=PA156 |year=2010 |publisher=Academic Press |isbn=978-0-08-096481-2 |page=156}} Semiaquatic animals, e.g. mouse-deer, may use bodies of water as refuges.{{cite journal | last1 = Meijaard | first1 = E. | last2 = Umilaela | last3 = de Silva Wijeyeratne | first3 = G. | title = Aquatic escape behaviour in mouse-deer provides insight into tragulid evolution | journal = Mammalian Biology | volume = 75 | issue = 5 | pages = 471–473 | date = September 2010 | doi = 10.1016/j.mambio.2009.05.007 }}

Game reserves have been deliberately used to enhance the total population of large game, e.g. deer, for at least a century.{{cite web|last1=Cronemiller|first1=F.P.|title=Deer Refuges under the Buck Law|url=https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=82675|website=California Department of Fish and Wildlife|publisher=U.S. Forest service|access-date=14 November 2017}} Limiting hunting by humans in a relatively small area allows the overall population to rebound.{{cite journal |doi=10.1890/11-0422.1 |pmid=22611861 |title=Predator–prey spatial game as a tool to understand the effects of protected areas on harvester–wildlife interactions |journal=Ecological Applications |volume=22 |issue=2 |pages=648–57 |year=2012 |last1=Tolon |first1=Vincent |last2=Martin |first2=Jodie |last3=Dray |first3=Stéphane |last4=Loison |first4=Anne |last5=Fischer |first5=Claude |last6=Baubet |first6=Eric |bibcode=2012EcoAp..22..648T }} The same principle applies to fisheries, which produce more fish when there is a nearby refuge from human predation in the form of a nature reserve, resulting in higher catches than if the whole area was open to fishing.{{cite journal |doi=10.1007/s10867-013-9329-5 |pmid=23949368 |pmc=3758828 |title=An ecological perspective on marine reserves in prey–predator dynamics |journal=Journal of Biological Physics |volume=39 |issue=4 |pages=749–76 |year=2013 |last1=Chakraborty |first1=Kunal |last2=Das |first2=Kunal |last3=Kar |first3=T. K }}{{cite journal |doi=10.1016/j.apm.2012.07.030 |title=A prey-predator model with harvesting for fishery resource with reserve area |journal=Applied Mathematical Modelling |volume=37 |issue=5 |pages=3048–62 |year=2013 |last1=Lv |first1=Yunfei |last2=Yuan |first2=Rong |last3=Pei |first3=Yongzhen |doi-access=free }}{{cite journal|last1=Rogers-Bennett|first1=Laura|last2=Hubbard|first2=Kristin E.|last3=Juhasz|first3=Christina I.|title=Dramatic declines in red abalone populations after opening a "de facto" marine reserve to fishing: Testing temporal reserves|journal=Biological Conservation|volume=157|year=2013|pages=423–431|issn=0006-3207|doi=10.1016/j.biocon.2012.06.023}} In human-managed systems like these, heavily hunted areas act as a sink in which animals die faster than they reproduce, but are replaced by animals migrating from the protected nature reserve area.{{cite journal|last1=Rassweiler|first1=A.|last2=Costello|first2=C.|last3=Siegel|first3=D. A.|title=Marine protected areas and the value of spatially optimized fishery management|journal=Proceedings of the National Academy of Sciences|volume=109|issue=29|year=2012|pages=11884–11889|issn=0027-8424|doi=10.1073/pnas.1116193109|pmid=22753469|pmc=3406815|bibcode=2012PNAS..10911884R|doi-access=free}}

Many prey animals systematically migrate between refuges and predator-rich feeding grounds, in patterns that minimize their chances of being caught by the predators.

The largest such migration by biomass is the oceans' diel vertical migration, in which vast quantities of organisms hide in the lightless depths of the open ocean, arising after dark to consume phytoplankton.{{cite web|url=http://www.cbc.ca/natureofthings/episodes/ocean-magic-at-night|title=Migration: World's Biggest Takes Place in Ocean at Night|publisher=CBC/Radio-Canada |access-date=11 November 2017}} This allows them to avoid the large predatory fish of the open ocean, as these predators are primarily visual hunters and need light to effectively catch prey. Similar types of migration also occur in fresh water. For example, small European perch exhibit a daily horizontal migration in some lakes in Finland. During the day they move away from the vegetated areas where the predation threat in the clear water is great, into more turbid open water areas, moving back at night because of the greater availability of zooplankton among the aquatic plants.{{cite book |title=Issues in Ecosystem Ecology: 2011 Edition |url=https://books.google.com/books?id=oettgWPNE6IC&pg=PT464 |year=2012 |publisher=Scholarly Editions |isbn=978-1-4649-6482-4 |pages=464–465}}

Refuge use reduces the likelihood of species extinction. There have been a number of mass extinction events. During some of these, denizens of the deep ocean have been relatively immune. The coelacanth for example, is a remnant species of a once common group of fishes, the Sarcopterygii, which disappeared from shallow seas at the time of the Cretaceous–Paleogene extinction event 66 million years ago, leaving only a couple of surviving species.{{cite book|author=Priede, Imants G. |title=Deep-Sea Fishes: Biology, Diversity, Ecology and Fisheries |url=https://books.google.com/books?id=fBcwDwAAQBAJ&pg=PA75|year=2017 |publisher=Cambridge University Press |isbn=978-1-316-03345-6 |page=75}}{{cite journal |last1=Renne |first1=Paul R. |last2=Deino |first2=Alan L. |last3=Hilgen |first3=Frederik J. |last4=Kuiper |first4=Klaudia F. |last5=Mark |first5=Darren F. |last6=Mitchell |first6=William S. |last7=Morgan |first7=Leah E. |last8=Mundil |first8=Roland |last9=Smit |first9=Jan |title=Time Scales of Critical Events Around the Cretaceous-Paleogene Boundary |journal=Science |date=7 February 2013 |volume=339 |issue=6120 |pages=684–687 |doi=10.1126/science.1230492 |pmid=23393261 |url=http://www.cugb.edu.cn/uploadCms/file/20600/20131028144132060.pdf |bibcode=2013Sci...339..684R|s2cid=6112274 }} Many coral taxa have used the deep ocean as a refuge, shifting from shallow to deep water and vice versa during their evolutionary history.{{cite book|author1=Woodley, Cheryl M. |author2=Downs, Craig A. |author3=Bruckner, Andrew W.|author4-link=James W. Porter (ecologist) |author4=Porter, James W. |author5=Galloway, Sylvia B.|title=Diseases of Coral|url=https://books.google.com/books?id=U8gbCQAAQBAJ&pg=PA416 |year=2016 |publisher=John Wiley & Sons |isbn=978-0-8138-2411-6 |page=416}} By developing wings and taking flight, insects exploited the air as a refuge, a place of safety from ground-based predators; this successful evolutionary strategy set the insects on the path to occupying the dominant position they hold today.{{cite journal |author=La Greca, Marcello |year=1980 |title=Origin and evolution of wings and flight in insects |journal=Bollettino di Zoologia Italiana |volume=47 |pages=65–82 |doi=10.1080/11250008009438706 }}

Human societies show a similar effect, with remote mountainous regions such as Zomia or the Scottish Highlands serving as refugia, allowing their inhabitants to maintain cultural traditions and languages that were being pushed to extinction in more accessible locations.{{cite journal |last1=Stringham |first1=Edward |title=Repelling States: Evidence from Upland Southeast Asia |journal=Review of Austrian Economics |date=2012|volume=25 |issue=1 |pages=17–33|doi=10.1007/s11138-010-0115-3 |s2cid=144582680 }}{{cite book|last1=Sowell |first1=Thomas|title=Basic Economics |date=2015 |isbn=978-0465060733 |pages=536–537 |edition=5th}}

Refuge from predators often depends on the size of the prey, meaning that individuals under or over a specific size cannot be consumed by the predator.

The small individuals are more likely to be able to tuck themselves away in some hole or cranny, or if, like barnacles, they are living on an exposed surface, are of negligible interest to predators like starfish because of their small size. Another example is the tidepool sculpin, which takes refuge in small rockpools when the tide is out, thus taking advantage of its small size and avoiding its larger fish predators.{{cite book |author=Kruckeberg, Arthur R.|title=The Natural History of Puget Sound Country |url=https://books.google.com/books?id=yqtVmRNdHWwC&pg=PA90 |year=1995 |publisher=University of Washington Press |isbn=978-0-295-97477-4 |pages=90–91}}

Large individuals may escape predators by being too large to be consumed, or their size allowing them to inhabit areas free of predators. Often larger individuals can still be consumed by predators, but the predator will prefer small prey as these require less work (handling) and the predator is less likely to get hurt by small individuals. Leading to a larger return on investment. An example is the rock lobster which can consume large individuals of the pink-lipped topshell, but will preferentially consume small individuals when given the choice.{{cite journal |last1=van Zyl |first1=R.F. |last2=Mayfield |first2=S. |last3=Pulfrich |first3=A. |last4=Griffiths |first4=C.L. |title=Predation by West Coast rock lobsters (Jasus lalandii) on two species of winkle (Oxystele sinensis and Turbo cidaris) |journal=South African Journal of Zoology |date=1998 |volume=33 |issue=4 |pages=203–209 |doi=10.1080/02541858.1998.11448473}} Some barnacles escape predators by settling further up the shore, away from predators. There the starfish cannot reach them when the tide is out, nor can whelks drill through their shells because they remain submerged for insufficient time during each tidal cycle. In this situation, size is a refuge in itself, in that it enables the barnacle to escape desiccation under circumstances that might be lethal to smaller individuals.{{cite book |author1=Ricketts, Edward Flanders |author2=Calvin, Jack |author3=Hedgpeth, Joel Walker |author4=Phillips, David W. |title=Between Pacific Tides |url=https://books.google.com/books?id=tUl5ESavtRIC&pg=PA477 |year=1985 |publisher=Stanford University Press |isbn=978-0-8047-2068-7 |page=477}}

• Natural reservoir
• Productivity (ecology)
• Refugium (population biology)
• Source–sink dynamics

{{reflist}}

Category:Ecology terminology

Category:Population ecology

Category:Disease ecology