thermus

{{Short description|Genus of bacteria}}

{{Other uses|Thermus (disambiguation)}}

{{Italic title}}

{{Automatic taxobox

| image = Thermus aquaticus.JPG

| image_caption = Thermus aquaticus

| taxon = Thermus

| authority = Brock & Freeze 1969

| type_species = Thermus aquaticus

| type_species_authority = Brock & Freeze 1969

| subdivision_ranks = Species

| subdivision =

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Thermus is a genus of thermophilic bacteria. It is one of several bacteria belonging to the Deinococcota phylum. According to comparative analysis of 16S rRNA, this is one the most ancient group of bacteria. {{Cite journal |last=Woese |first=C R |date=June 1987 |title=Bacterial evolution |journal=Microbiological Reviews |language=en |volume=51 |issue=2 |pages=221–271 |doi=10.1128/mr.51.2.221-271.1987 |pmid=2439888 |issn=0146-0749|pmc=373105 }} Thermus species can be distinguished from other genera in the family Thermaceae as well as all other bacteria by the presence of eight conserved signature indels found in proteins such as adenylate kinase and replicative DNA helicase as well as 14 conserved signature proteins that are exclusively shared by members of this genus.{{Cite journal|last1=Ho|first1=Jonathan|last2=Adeolu|first2=Mobolaji|last3=Khadka|first3=Bijendra|last4=Gupta|first4=Radhey S.|date=October 2016|title=Identification of distinctive molecular traits that are characteristic of the phylum "Deinococcus–Thermus" and distinguish its main constituent groups|url=http://dx.doi.org/10.1016/j.syapm.2016.07.003|journal=Systematic and Applied Microbiology|volume=39|issue=7|pages=453–463|doi=10.1016/j.syapm.2016.07.003|pmid=27506333 |bibcode=2016SyApM..39..453H |issn=0723-2020}}

Phylogeny

{{See also|Bacterial taxonomy}}

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) {{cite web | author=J.P. Euzéby | url=https://lpsn.dsmz.de/genus/thermus | title=Thermus | access-date=2022-07-20 | publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)}} and the National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=1297&lvl=6&lin |title=Deinococcus–Thermus |access-date=2022-07-20 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database}}{{cite journal | author = Brock TD | author2 = Freeze H | name-list-style = amp | title = Thermus aquaticus, a Nonsporulating Extreme Thermophile | journal = Journal of Bacteriology | volume = 98 | issue = 1 | pages = 289–97 | date = 1969 | pmid = 5781580 | pmc = 249935 | doi = 10.1128/jb.98.1.289-297.1969}}{{cite journal|last1=Chung|first1=A. P.|last2=Rainey|first2=F. A.|last3=Valente|first3=M.|last4=Nobre|first4=M. F.|last5=da Costa|first5=M. S.|title=Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland|journal=International Journal of Systematic and Evolutionary Microbiology|volume=50|issue=1|date=2000|pages=209–217|issn=1466-5026|doi=10.1099/00207713-50-1-209|pmid=10826806|doi-access=free}}

Between all its species, T. thermophilus has a special importance as a model organism for basic and applied research.

class="wikitable"
colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}

! colspan=1 | 120 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=bac120_r220.sp_labels |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/bac120_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}

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{{Clade | style=font-size:90%;line-height:80%

|label1=Thermus

|1={{clade

|1={{clade

|1=T. oshimai Williams et al. 1996{{Cite journal|last1=WILLIAMS|first1=RALPH A. D.|last2=SMITH|first2=KELVIN E.|last3=WELCH|first3=SIMON G.|last4=MICALLEF|first4=JANICE|date=1996-01-01|title=Thermus oshimai sp. nov., Isolated from Hot Springs in Portugal, Iceland, and the Azores, and Comment on the Concept of a Limited Geographical Distribution of Thermus Species|journal=International Journal of Systematic and Evolutionary Microbiology|volume=46|issue=2|pages=403–408|doi=10.1099/00207713-46-2-403|pmid=8934898|doi-access=free}}

|2=T. thermophilus (ex Oshima and Imahori 1974) Manaia et al. 1995{{Cite journal|last1=Manaia|first1=Célia M.|last2=Hoste|first2=Bart|last3=Carmen Gutierrez|first3=M.|last4=Gillis|first4=Monique|last5=Ventosa|first5=Antonio|last6=Kersters|first6=Karel|last7=Da Costa|first7=Milton S.|date=1995-02-01|title=Halotolerant Thermus Strains from Marine and Terrestrial Hot Springs Belong to Thermus thermophilus (ex Oshima and Imahori, 1974) nom. rev. emend.|journal=Systematic and Applied Microbiology|volume=17|issue=4|pages=526–532|doi=10.1016/S0723-2020(11)80072-X|bibcode=1995SyApM..17..526M }}

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|1=T. filiformis Hudson et al. 1987{{Cite journal|last1=Hudson|first1=J. A.|last2=Morgan|first2=H. W.|last3=Daniel|first3=R. M.|date=1987-01-01|title=Thermus filiformis sp. nov., a Filamentous Caldoactive Bacterium|journal=International Journal of Systematic and Evolutionary Microbiology|volume=37|issue=4|pages=431–436|doi=10.1099/00207713-37-4-431|doi-access=free}}

|2={{clade

|1=T. composti Vajna et al. 2012{{Cite journal|last1=Vajna|first1=B.|last2=Kanizsai|first2=S.|last3=Keki|first3=Z.|last4=Marialigeti|first4=K.|last5=Schumann|first5=P.|last6=Toth|first6=E. M.|date=2012-07-01|title=Thermus composti sp. nov., isolated from oyster mushroom compost|journal=International Journal of Systematic and Evolutionary Microbiology|volume=62|issue=Pt 7|pages=1486–1490|doi=10.1099/ijs.0.030866-0|pmid=21856987}}

|2={{clade

|1=T. aquaticus Brock and Freeze 1969{{Cite journal|last1=Brock|first1=Thomas D.|last2=Freeze|first2=Hudson|date=1969-04-01|title=Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile|url= |journal=Journal of Bacteriology|language=en|volume=98|issue=1|pages=289–297|issn=0021-9193|pmc=249935|pmid=5781580|doi=10.1128/jb.98.1.289-297.1969}}

|2={{clade

|1=T. arciformis Zhang et al. 2010{{Cite journal|last1=Zhang|first1=X. Q.|last2=Ying|first2=Y.|last3=Ye|first3=Y.|last4=Xu|first4=X. W.|last5=Zhu|first5=X. F.|last6=Wu|first6=M.|date=2010-04-01|title=Thermus arciformis sp. nov., a thermophilic species from a geothermal area|journal=International Journal of Systematic and Evolutionary Microbiology|volume=60|issue=4|pages=834–839|doi=10.1099/ijs.0.007690-0|pmid=19661520}}

|2={{clade

|1=T. islandicus Bjornsdottir et al. 2009{{Cite journal|last1=Bjornsdottir|first1=Snaedis H.|last2=Petursdottir|first2=Solveig K.|last3=Hreggvidsson|first3=Gudmundur O.|last4=Skirnisdottir|first4=Sigurlaug|last5=Hjorleifsdottir|first5=Sigridur|last6=Arnfinnsson|first6=Johann|last7=Kristjansson|first7=Jakob K.|date=2009-01-01|title=Thermus islandicus sp. nov., a mixotrophic sulfur-oxidizing bacterium isolated from the Torfajokull geothermal area|journal=International Journal of Systematic and Evolutionary Microbiology|volume=59|issue=12|pages=2962–2966|doi=10.1099/ijs.0.007013-0|pmid=19628590|doi-access=free}}

|2={{clade

|1=T. sediminis Zhou et al. 2021

|2={{clade

|1=T. igniterrae Chung et al. 2000

|2={{clade

|1={{clade

|1=T. hydrothermalis Li et al. 2023

|2={{clade

|1=T. brockianus Williams et al. 1995{{Cite journal|last1=WILLIAMS|first1=R. A. D.|last2=SMITH|first2=K. E.|last3=WELCH|first3=S. G.|last4=MICALLEF|first4=J.|last5=SHARP|first5=R. J.|date=1995-07-01|title=DNA Relatedness of Thermus Strains, Description of Thermus brockianus sp. nov., and Proposal To Reestablish Thermus thermophilus (Oshima and Imahori)|journal=International Journal of Systematic Bacteriology|volume=45|issue=3|pages=495–499|doi=10.1099/00207713-45-3-495|pmid=8590676|doi-access=free}}

|2=T. thalpophilus Li et al. 2023

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|1=T. thermamylovorans Ming et al. 2020

|2={{clade

|1={{clade

|1=T. caldilimi Li et al. 2021

|2=T. tengchongensis Yu et al. 2013{{cite journal | last1 = Yu | first1 = Tian-Tian | last2 = Yao | first2 = Ji-Cheng | last3 = Ming | first3 = Hong | last4 = Yin | first4 = Yi-Rui | last5 = Zhou | first5 = En-Min | last6 = Liu | first6 = Min-Jiao | last7 = Tang | first7 = Shu-Kun | last8 = Li | first8 = Wen-Jun | date = 2013 | title = Thermus tengchongensis sp. nov., isolated from a geothermally heated soil sample in Tengchong, Yunnan, south-west China | journal = Antonie van Leeuwenhoek | volume = 103 | issue = 3 | pages = 513–518 | doi = 10.1007/s10482-012-9833-9 | pmid=23104072}}

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|1=T. caliditerrae Ming et al. 2014{{Cite journal|last1=Ming|first1=H.|last2=Yin|first2=Y.-R.|last3=Li|first3=S.|last4=Nie|first4=G.-X.|last5=Yu|first5=T.-T.|last6=Zhou|first6=E.-M.|last7=Liu|first7=L.|last8=Dong|first8=L.|last9=Li|first9=W.-J.|date=2014-02-01|title=Thermus caliditerrae sp. nov., a novel thermophilic species isolated from a geothermal area|journal=International Journal of Systematic and Evolutionary Microbiology|volume=64|issue=Pt 2|pages=650–656|doi=10.1099/ijs.0.056838-0|pmid=24158953|s2cid=6476087 }}

|2={{clade

|1={{clade

|1=T. brevis Hu et al. 2022

|2=T. tenuipuniceus Zhou et al. 2019

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|2={{clade

|1={{clade

|1=T. caldifontis Khan et al. 2017

|2={{clade

|1=T. albus Li et al. 2023

|2=T. altitudinis Li et al. 2023

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|2={{clade

|1=T. neutrinimicus Li et al. 2023

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|1=T. amyloliquefaciens Yu et al. 2015{{Cite journal|last1=Yu|first1=Tian-Tian|last2=Park|first2=Dong-Jin|last3=Hozzein|first3=Wael N.|last4=Kim|first4=Chang-Jin|last5=Wadaan|first5=Mohammed A. M.|last6=Ming|first6=Hong|last7=Li|first7=Wen-Jun|last8=Yao|first8=Ji-Cheng|last9=Zhou|first9=En-Min|date=2015-08-01|title=Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample|journal=International Journal of Systematic and Evolutionary Microbiology|volume=65|issue=8|pages=2491–2495|doi=10.1099/ijs.0.000289|pmid=25920724|doi-access=free}}

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|1=T. antranikianii Chung et al. 2000{{Cite journal|last1=Chung|first1=A. P.|last2=Rainey|first2=F. A.|last3=Valente|first3=M.|last4=Nobre|first4=M. F.|last5=Costa|first5=M. S. da|date=2000-01-01|title=Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland|journal=International Journal of Systematic and Evolutionary Microbiology|volume=50|issue=1|pages=209–217|doi=10.1099/00207713-50-1-209|pmid=10826806|doi-access=free}}

|2=T. scotoductus Kristjansson et al. 1994{{cite journal | last1 = Kristjánsson| first1 = Jakob | last2 = Hjörleifsdóttir | first2 = Sigrídur | last3 = Marteinsson | first3 = Viggó| last4 = Alfredsson| first4 = Gudni| date = 1994| title = Thermus scotoductus, sp. nov., a Pigment-Producing Thermophilic Bacterium from Hot Tap Water in Iceland and Including Thermus sp. X-1| journal = Systematic and Applied Microbiology | volume = 17| issue = 1 | pages = 44–50 | doi = 10.1016/S0723-2020(11)80030-5| bibcode = 1994SyApM..17...44K }}

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{{clade|style=font-size:90%;line-height:80%

|label1=Thermus

|1={{Clade

|1=T. filiformis

|2={{clade

|1=T. oshimai

|2={{clade

|1={{clade

|1=T. islandicus

|2={{clade

|1=T. aquaticus

|2=T. sediminis

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|2={{clade

|1={{clade

|1={{clade

|1=T. arciformis

|2="T. kawarayensis" Kurosawa, Itoh & Itoh 2005

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|2={{clade

|1=T. composti

|2={{clade

|1="T. parvatiensis" Dwivedi et al. 2015

|2=T. thermophilus

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|2={{clade

|1={{clade

|1=T. thalpophilus

|2={{clade

|1=T. brockianus

|2=T. hydrothermalis

}}

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|2={{clade

|1=T. igniterrae

|2={{clade

|1=T. thermamylovorans

|2={{clade

|1=T. caliditerrae

|2={{clade

|1=T. tengchongensis

|2={{clade

|1={{clade

|1=T. amyloliquefaciens

|2=T. caldifontis

}}

|2={{clade

|1=T. caldilimi

|2={{clade

|1=T. tenuipuniceus

|2={{clade

|1=T. antranikianii

|2=T. scotoductus

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Species incertae sedis:{{Cite journal|last1=TENREIRO|first1=S.|last2=NOBRE|first2=M. F.|last3=COSTA|first3=M. S. DA|date=1995-10-01|title=Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., Two New Species Related to Thermus ruber but with Lower Growth Temperatures|journal=International Journal of Systematic Bacteriology|volume=45|issue=4|pages=633–639|doi=10.1099/00207713-45-4-633|pmid=7547281|doi-access=free}}

  • "T. anatoliensis" Kacagan et al. 2016
  • "T. caldophilus" Taguchi et al. 1983
  • "T. eggertssonii" Peters 2008
  • "T. murrieta" Benner et al. 2006
  • "T. nonproteolyticus" 1992
  • "T. rehai" Lin et al. 2002
  • "T. yunnanensis" Gong et al. 2005

Habitats

The strains of the genus Thermus are generally isolated from hydrothermal areas where the range of water temperature is 55–70 °C and that of pH is 5.0–10.5.{{Citation |last1=Da Costa |first1=Milton S. |title=The Genus Thermus and Relatives |date=2006 |work=The Prokaryotes |pages=797–812 |editor-last=Dworkin |editor-first=Martin |url=http://link.springer.com/10.1007/0-387-30747-8_32 |access-date=2024-06-05 |place=New York, NY |publisher=Springer New York |language=en |doi=10.1007/0-387-30747-8_32 |isbn=978-0-387-25497-5 |last2=Rainey |first2=Fred A. |last3=Nobre |first3=M. Fernanda |editor2-last=Falkow |editor2-first=Stanley |editor3-last=Rosenberg |editor3-first=Eugene |editor4-last=Schleifer |editor4-first=Karl-Heinz}}

The first isolate of the genus Thermus was isolated from hydrothermal areas in Yellowstone National Park. Later on more isolates were obtained from several hydrothermal areas worldwide, such as in Japan,{{Cite journal |last1=Oshima |first1=T. |last2=Imahori |first2=K. |date=1974-01-01 |title=Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a Nonsporulating Thermophilic Bacterium from a Japanese Thermal Spa |url=https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-24-1-102 |journal=International Journal of Systematic Bacteriology |language=en |volume=24 |issue=1 |pages=102–112 |doi=10.1099/00207713-24-1-102 |issn=0020-7713}}{{Cite journal |last1=Saiki |first1=Takashi |last2=Kimura |first2=Ryohei |last3=Arima |first3=Kei |date=January 1972 |title=Isolation and Characterization of Extremely Thermophilic Bacteria from Hot Springs |url=https://academic.oup.com/bbb/article/36/13/2357-2366/5978847 |journal=Agricultural and Biological Chemistry |language=en |volume=36 |issue=13 |pages=2357–2366 |doi=10.1080/00021369.1972.10860589 |issn=0002-1369}} Iceland,{{Cite journal |last1=Pask-Hughes |first1=R. A. |last2=Williams |first2=R. A. D. |date=1977-10-01 |title=Yellow-pigmented Strains of Thermus spp. from Icelandic Hot Springs |journal=Journal of General Microbiology |language=en |volume=102 |issue=2 |pages=375–383 |doi=10.1099/00221287-102-2-375 |doi-access=free |issn=0022-1287}} New Zealand, New Mexico or the Australian Artesian Basin.

See also

References

{{Reflist}}

{{Portal bar|Biology}}

{{Bacteria classification}}

{{Extremophile}}

{{Taxonbar|from=Q7783265}}

Category:Deinococcota

Category:Thermophiles

Category:Thermozoa

Category:Organisms living on hydrothermal vents

Category:Bacteria genera