Collaborative Drug Discovery

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{{Infobox company

| name = Collaborative Drug Discovery, Inc.

| logo = CDD-Vault-LogoFB (1).jpg

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| type = Private

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| foundation = {{start date and age|2004}}

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| location = Burlingame, California, U.S.

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| industry = {{Hlist | Life Sciences | Informatics | ELN | Pharma Intelligence}}

| products = {{Ubl | CDD Vault | PharmaKB | CDD Public}}

| revenue =

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| website = {{URL|collaborativedrug.com}}

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Collaborative Drug Discovery (CDD) is a software company founded in 2004 as a spin-out of Eli Lilly by Barry Bunin, PhD. CDD utilizes a web-based database solution for managing drug discovery data, primarily through the CDD Vault product which is focused around small molecules and associated bio-assay data. In 2021, CDD launched its first commercial data offering, PharmaKB,{{Cite web |url=https://www.collaborativedrug.com/about/ |title=CDD Milestones|date=July 17, 2019 |access-date=December 9, 2022 |publisher=Collaborative Drug Discovery Inc.}}{{self-published source|date=December 2022}} formerly BioHarmony,{{Cite web |url=https://www.pharmakb.com/blog/bioharmony-is-now-pharmakb-the-pharma-knowledgebase |title=PharmaKB- Knowledgebase Update |website=www.pharmakb.com}}{{self-published source|date=December 2022}}{{Cite press release |url=https://www.prnewswire.com/in/news-releases/collaborative-drug-discovery-cdd-launches-bioharmony-836337262.html |title=CDD Launches BioHarmony |website=www.prnewswire.com |access-date=December 9, 2022}}{{self-published source|date=December 2022}} as The Pharma KnowledgeBase, which is centered around pharma company, drug, and disease information for research, business intelligence, and investors.

Products

1. CDD Vault{{Cite web |url=http://tsdr.uspto.gov/documentviewer?caseId=sn77791158&docId=ORC20101207004753#docIndex=6&page=1 |title=USPTO TSDR Case Viewer}}{{Cite web |url=https://www.collaborativedrug.com/benefits/ |title=CDD Vault Benefits |date=August 11, 2019}}{{self-published source|date=December 2022}} is a research informatics web platform by Collaborative Drug Discovery. It contains several modules for collaborative project teams to manage, analyze, and share both private & public data. It is used by biotech companies, CROs, academic labs, research hospitals, agrochemical and consumer goods companies. CDD Vault is a modern web application for chemical registration, assay data management, and SAR analysis. It is designed to be simple to use and extremely secure.

class="wikitable sortable"
CDD Vault modules

! Type

! Description

Registration{{Cite web |url=https://www.collaborativedrug.com/registration |title=CDD Vault Registration - Collaborative Drug Discovery Inc. (CDD) |date=August 7, 2024 |website=www.collaborativedrug.com}}{{self-published source|date=August 2024}}

| Chemical registration system

| Web application within CDD Vault for chemical and biological registration, assay data management, and SAR analysis.

Activity{{Cite web |url=https://www.collaborativedrug.com/activity |title=CDD Vault Activity - Collaborative Drug Discovery Inc. (CDD) |date=August 7, 2024 |website=www.collaborativedrug.com}}{{self-published source|date=August 2024}}

| Experimental data

| Web application within CDD Vault for managing and analyzing experimental data associated with registered entities, and generating reports.

Visualization{{Cite web |url=https://www.collaborativedrug.com/scientific-data-visualization-software |title=CDD Vault Visualization Analysis Tool |date=August 7, 2024}}{{self-published source|date=August 2024}}

| Scientific visualization

| Web application within CDD Vault allowing plotting and analysis of large data sets to find interesting patterns, activity hotspots, and outliers.

Assays{{Cite web |url=https://www.collaborativedrug.com/assays |title=CDD Vault Assays - Collaborative Drug Discovery Inc. (CDD) |date=August 7, 2024 |website=www.collaborativedrug.com}}{{self-published source|date=August 2024}}

| Bioinformatics

| Web application within CDD Vault for Assay Informatics to allow for easy registration, search, and systematic comparison of assays using standardized protocols and runtime details.

ELN{{Cite web |url=https://www.collaborativedrug.com/electronic-lab-notebook|title=CDD Electronic Lab Notebook (ELN) |date=August 7, 2024}}{{self-published source|date=August 2024}}

| Electronic lab notebook

| Web application within CDD Vault that integrates a full analysis and visualization environment with chemical and biological assay data repositories.

Inventory{{Cite web |url=https://www.collaborativedrug.com/lab-inventory-management-software |title=CDD Vault Integrated Inventory System |date=August 7, 2024}}{{self-published source|date=August 2024}}

| Inventory management software

| Web application integrated within CDD Vault for tracking the supply and location of compounds and reagents.

Curves{{Cite web |url=https://www.collaborativedrug.com/benefits/inventory/ |title=CDD Vault Curves |date=August 7, 2024}}{{self-published source|date=August 2024}}

| Curve fitting

| Web application integrated within CDD Vault to generate, QC, and analyze results such as IC50, pIC50, EC50.

AI{{Cite web |url=https://www.collaborativedrug.com/ai-drug-discovery |title=CDD Vault AI - Collaborative Drug Discovery Inc. (CDD) |date=August 7, 2024 |website=www.collaborativedrug.com}}{{self-published source|date=August 2024}}

| Artificial intelligence in pharmacy

| Web application within CDD Vault for Artificial Intelligence (AI) capabilities such as identifying similar compounds, synthesizable molecules, bioisosteric suggestions, and patent issues.

Automation {{Cite web |url=https://www.collaborativedrug.com/automation |title=CDD Vault Automation - Collaborative Drug Discovery Inc. (CDD) |date=August 7, 2024 |website=www.collaborativedrug.com}}{{self-published source|date=August 2024}}

| API, Data mapping

| Web application within CDD Vault to connect data through an API, Parser, and Mapping Tools.

CDD Public{{Cite web |url=https://www.collaborativedrug.com/public-access/ |title=Public Access |date=July 18, 2019}}{{self-published source|date=December 2022}}

| Chemical database

| Free database also integrated within CDD Vault for fostering open collaboration containing over 3 million molecules accessible to everyone in the drug discovery community.

2. PharmaKB is a knowledgebase for pharma-related information. Available data spans (preclinical, clinical, financial, patents, and post-approval) information about companies, drugs, and diseases. It is designed to be used by researchers, those practicing business intelligence, and investors. PharmaKB also offers real-time updates with a subscription model instead of static reports. As a throwback to CDD Vault's slogan of "Complexity Simplified", PharmaKB uses the slogan of "Data Simplified" and promotes a data trilogy of Company, Drug, and Disease. The product is meant to expand the company's scope from working with mostly preclinical researchers to being relevant for clinical and post-approval stages of drug development, including: Pharmacovigilance or Drug Safety, Regulatory Affairs, Competitive Intelligence - also referred to as Pharma Intelligence within its industry, and Pharmacoeconomics as well as investors and publishers of medical content.

Collaborations

The capability for inter-group collaboration attracted attention from the Bill & Melinda Gates Foundation, who in 2008 awarded CDD with a two million dollar grant being used to support researchers combating tuberculosis.{{Cite web |url=http://www.gatesfoundation.org/press-releases/Pages/database-tb-new-cure-081117.aspx |title=Collaborative Drug Discovery Receives Grant to Support the Development of a Database to Accelerate Discovery of New Therapies Against Tuberculosis |access-date=August 24, 2010 |archive-url=https://web.archive.org/web/20100706161034/http://www.gatesfoundation.org/press-releases/Pages/database-tb-new-cure-081117.aspx |archive-date=July 6, 2010 |url-status=dead}}

In 2010, GlaxoSmithKline released 13,471 molecules screened for activity against malaria to the public. These molecules and their associated screening data are available via CDD Public, as well in as the National Library of Medicine's PubChem and the European Bioinformatics Institute's ChEMBL database.{{Cite press release |url=http://www.gsk.com/media/pressreleases/2010/2010_pressrelease_10046.htm |publisher=GlaxoSmithKline |date=May 19, 2010 |location=London |archive-url=https://web.archive.org/web/20100601002556/http://www.gsk.com/media/pressreleases/2010/2010_pressrelease_10046.htm|url-status=dead |title=New research identifies promising leads to follow in search for medicines to fight malaria|archive-date=June 1, 2010}} This data has served as the basis for several cheminformatics analyses.{{cite journal |last1=Ekins |first1=Sean |authorlink2=Antony John Williams |last2=John Williams |first2=Antony |year=2010 |title=When Pharmaceutical Companies Publish Large Datasets: An Abundance of riches or fool's gold? |journal=Drug Discov Today |volume=15 |issue=19–20 |pages=812–815 |pmid=20732447 |doi=10.1016/j.drudis.2010.08.010}}Ekins S and Williams AJ, Meta-analysis of molecular property patterns and filtering of public datasets of antimalarial “hits” and drugs, MedChemComm, 1: 325-330, 2010. {{doi|10.1039/C0MD00129E}}Ekins S, Kaneko T, Lipinski CA, Bradford J, Dole K, Spektor A, Gregory K, Blondeau D, Ernst S, Yang J, Goncharoff N, Hohman M and Bunin BA, Analysis and hit filtering of a very large library of compounds screened against Mycobacterium tuberculosis, Mol Biosyst, 6: 2316-2324, 2010, {{doi|10.1039/C0MB00104J}}

In February 2011 CDD began participating in the collaborative MM4TB project led by Stewart Cole{{Cite web |url=https://archiveweb.epfl.ch/cole-lab.epfl.ch/index.html |title=UPCOL – Cole Lab – Chair of Microbial Pathogenesis}} and including participants from AstraZeneca and Sanofi Aventis.{{Cite web |url=http://mm4tb.org/ |title=More Medicines for Tuberculosis |website=MM4TB |archive-url=https://web.archive.org/web/20220119091111/http://mm4tb.org/ |archive-date=January 19, 2022 |url-status=dead}}

See also

References

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