Haloferax

{{Short description|Genus of archaea}}

{{Automatic taxobox

| image = Haloferax mediterranei SEM.png

| image_caption = SEM image of Haloferax mediterranei.

| taxon = Haloferax

| authority = Torreblanca et al. 1986

| type_species = Haloferax volcanii

| type_species_authority = (Mullakhanbhai & Larsen 1975) Torreblanca et al. 1986

| subdivision_ranks = Species

| subdivision = See text

}}

Haloferax (common abbreviation: Hfx.) is a genus of halobacteria in the order Haloferacaceae.

Genetic exchange

Cells of H. mediterranei and cells of the related species H. volcanii can undergo a process of genetic exchange between two cells which involves cell fusion resulting in a heterodiploid cell (containing two different chromosomes in one cell).{{cite journal |vauthors=Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U |title=Low species barriers in halophilic archaea and the formation of recombinant hybrids |journal=Curr. Biol. |volume=22 |issue=15 |pages=1444–8 |date=August 2012 |pmid=22748314 |doi=10.1016/j.cub.2012.05.056 |doi-access=free }} Although this genetic exchange ordinarily occurs between two cells of the same species, it can also occur at a lower frequency between an H. mediterranei and an H. volcani cell. These two species have an average nucleotide sequence identity of 86.6%. During this exchange process, a diploid cell is formed that contains the full genetic repertoire of both parental cells, and genetic recombination is facilitated. Subsequently, the cells separate, giving rise to recombinant cells.

Taxonomy

As of 2022, 13 species are validly published under the genus Haloferax.

;Proposed species

Several species and novel binomial names have been proposed, but not validly published.

  • "Haloferax antrum" Enache et al. 2006,{{citation |url=https://www.ebi.ac.uk/ena/browser/view/AB258308 |title=EBA - European Nucleotide Archive | access-date=2022-07-14}} "Haloferax opilio" Enache et al. 2006, "Haloferax rutilus" Enache et al. 2006 and "Haloferax viridis" Enache et al. 2006 were isolated from Romanian salt lakes and first proposed as new species in 2006.{{citation |url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=381855 |title=NCBI Taxonomy browser (Haloferax antrum) | access-date=2022-07-14}} Only H. prahovense, that was proposed along them has since been validly published.
  • "Haloferax berberensis" Kharroub et al. 2005e was isolated in Algeria and proposed as new species in 2005.{{citation |url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340952 |title=NCBI Taxonomy browser (Haloferax berberensis) | access-date=2022-07-14}}
  • Haloferax litoreum, Haloferax marinisediminis and Haloferax marinum were first published in 2021, but are not accepted as of 2022.{{cite web | url=https://lpsn.dsmz.de/species/haloferax-litoreum | title=LPSN - List of Prokaryotic names with Standing in Nomenclature | publisher=Deutsche Sammlung von Mikroorganismen und Zellkulturen | access-date=2022-07-14}}
  • Haloferax marisrubri and Haloferax profundi were first published in 2020, but is not accepted as of 2022.{{cite web | url=https://lpsn.dsmz.de/species/haloferax-marisrubri | title=LPSN - List of Prokaryotic names with Standing in Nomenclature | publisher=Deutsche Sammlung von Mikroorganismen und Zellkulturen | access-date=2022-07-14}}
  • Haloferax massilisiensis or Haloferax massiliense was first published in 2016 and again in 2018 as human associated halophilic archaeon. As of 2022, this species is not accepted.{{cite web | url=https://lpsn.dsmz.de/species/haloferax-massiliensis | title=LPSN - List of Prokaryotic names with Standing in Nomenclature | publisher=Deutsche Sammlung von Mikroorganismen und Zellkulturen | access-date=2022-07-14}}

=Phylogeny=

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web|author=J.P. Euzéby |url=https://lpsn.dsmz.de/genus/haloferax |title=Haloferax |accessdate=2023-10-10 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)}} and National Center for Biotechnology Information (NCBI).{{cite web |author = Sayers |display-authors=et al.| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=2251&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Haloferax |accessdate=2023-10-10 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database}}

class="wikitable"
colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}

! colspan=1 | 53 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=ar53_r220.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/ar53_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}

style="vertical-align:top|

{{Clade|style=font-size:90%; line-height:90%

|label1=Haloferax

|1={{clade

|1=H. namakaokahaiae McDuff et al. 2017

|2={{clade

|1={{clade

|1=H. elongans

|2=H. larsenii

}}

|2={{clade

|1=H. sulfurifontis

|2={{clade

|1={{clade

|1=H. mediterranei

|2=H. mucosum

}}

|2={{clade

|1={{clade

|1=H. chudinovii Saralov et al. 2014

|2=H. denitrificans

}}

|2={{clade

|1=H. lucentense corrig. Gutierrez et al. 2004

|2={{clade

|1=H. gibbonsii

|2={{clade

|1=H. prahovense

|2={{clade

|1=H. alexandrinus Asker & Ohta 2002

|2=H. volcanii

}}

}}

}}

}}

}}

}}

}}

}}

}}

}}

|

{{Clade|style=font-size:90%; line-height:90%

|label1=Haloferax

|1={{clade

|1={{clade

|1=H. elongans Allen et al. 2008

|2=H. larsenii Xu et al. 2007

}}

|2={{clade

|1={{clade

|1={{clade

|1="H. litoreum" Cho et al. 2021

|2="H. profundi" Zhang et al. 2020

}}

|2={{clade

|1="H. marinisediminis" Cho et al. 2021

|2="H. marinum" Cho et al. 2021

}}

}}

|2={{clade

|1={{clade

|1=H. mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987

|2=H. mucosum Allen et al. 2008

}}

|2={{clade

|1={{clade

|1=H. gibbonsii Juez et al. 1986

|2=H. prahovense Enache et al. 2007

}}

|2={{clade

|1="H. marisrubri" Zhang et al. 2020

|2={{clade

|1={{clade

|1="H. massiliensis" Khelaifia & Raoult 2016

|2=H. volcanii (Mullakhanbhai & Larsen 1975) Torreblanca et al. 1986

}}

|2={{clade

|1=H. denitrificans (Tomlinson et al. 1986) Tindall et al. 1989

|2=H. sulfurifontis Elshahed et al. 2004

}}

}}

}}

}}

}}

}}

}}

}}

See also

References

{{Reflist}}

Further reading

  • {{cite journal |vauthors=Oren A, Ventosa A | date = 2000 | title = International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia | journal = Int. J. Syst. Evol. Microbiol. | volume = 50 | issue = 3 | pages = 1405–1407 | pmid = 10843089 | doi=10.1099/00207713-50-3-1405| doi-access =free }}
  • {{cite journal |vauthors=Torreblanca M, Rodriquez-Valera F, Juez G, Ventosa A, Kamekura M, Kates M | date = 1986 | title = Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen.nov | journal = Syst. Appl. Microbiol. | volume = 8 | issue = 1–2 | pages = 89–99 | doi=10.1016/s0723-2020(86)80155-2}}
  • {{cite book | last = Gibbons | first = NE | date = 1974 | chapter = Family V. Halobacteriaceae fam. nov. | title = Bergey's Manual of Determinative Bacteriology | edition = 8th | editor = RE Buchanan | editor2 = NE Gibbons | publisher = The Williams & Wilkins Co. | location = Baltimore | isbn = 0-683-01117-0 | url-access = registration | url = https://archive.org/details/bergeysmanualofd00atio }}