Haloferacaceae

{{Short description|Family of bacteria}}

{{Automatic taxobox

| image = Haloquadratum walsbyi00.jpg

| image_caption = Haloquadratum walsbyi

| taxon = Haloferacaceae

| authority = Gupta et al. 2015

| subdivision_ranks = Genera

| subdivision_ref =

| subdivision =

}}

Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales.{{Cite journal|last1=Gupta|first1=Radhey S.|last2=Naushad|first2=Sohail|last3=Baker|first3=Sheridan|date=2015-03-01|title=Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.|journal=International Journal of Systematic and Evolutionary Microbiology|volume=65|issue=Pt_3|pages=1050–1069|doi=10.1099/ijs.0.070136-0|pmid=25428416|issn=1466-5026|doi-access=free}}{{Cite journal|last1=Grant|first1=William D.|last2=Kamekura|first2=Masahiro|last3=McGenity|first3=Terry J.|last4=Ventosa|first4=Antonio|date=2015-09-14|title=Halobacteria class. nov.|url=http://dx.doi.org/10.1002/9781118960608.cbm00026|journal=Bergey's Manual of Systematics of Archaea and Bacteria|pages=1|doi=10.1002/9781118960608.cbm00026|isbn=9781118960608|url-access=subscription}}{{Cite journal|last=Oren|first=Aharon|date=2012-02-01|title=Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics|journal=International Journal of Systematic and Evolutionary Microbiology|volume=62|issue=2|pages=263–271|doi=10.1099/ijs.0.038653-0|pmid=22155757|issn=1466-5026|doi-access=free}} The type genus of this family is Haloferax. Its biochemical characteristics are the same as the order Haloferacales.

The name Haloferacaceae is derived from the Latin term Haloferax, referring to the type genus of the family and the suffix "-ceae", an ending used to denote a family. Together, Haloferacaceae refers to a family whose nomenclatural type is the genus Haloferax.

Taxonomy and molecular signatures

As of 2021, Haloferacaceae contains 10 validly published genera. This family can be molecularly distinguished from other Halobacteria by the presence of five conserved signature proteins (CSPs) and four conserved signature indels (CSIs) present in the following proteins: thermosome, ribonuclease BN and hypothetical proteins.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN){{cite web |author=A.C. Parte |url=https://lpsn.dsmz.de/family/haloferacaceae |title=Haloferacaceae |accessdate=2021-11-17 |publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN) |display-authors=et al.}} and National Center for Biotechnology Information (NCBI).{{cite web |author=C.L. Schoch |display-authors=et al.| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=1644056&lvl=3&lin=f&keep=1&srchmode=1&unlock |title=Haloferacaceae |accessdate=2022-06-05 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database}}

class="wikitable"
colspan=1 | 16S rRNA based LTP_10_2024{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 December 2024}}{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_10_2024.ntree |access-date=10 December 2024}}{{cite web|title=LTP_10_2024 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_10_2024_release_notes.pdf |access-date=10 December 2024}}

! colspan=1 | 53 marker proteins based GTDB 09-RS220{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=ar53_r220.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/ar53_r220.sp_labels.tree |website=Genome Taxonomy Database|access-date=10 May 2024}}{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=Genome Taxonomy Database|access-date=10 May 2024}}

style="vertical-align:top|

{{Clade|style=font-size:90%; line-height:90%

|label1=

|1={{clade

|1=Natronoarchaeaceae

|2={{clade

|label1=Halorubraceae

|1={{clade

|1=Haloparvum *

|2={{clade

|1=Halopenitus

|2=Halorubrum

}}

}}

}}

}}

}}

{{Clade|style=font-size:90%; line-height:90%

|label1=Haloferacaceae

|1={{clade

|1=Salinirubrum

|2={{clade

|1=Halalkaliarchaeum

|2={{clade

|1={{clade

|1=Halolamina

|2=Halobaculum

}}

|2={{clade

|1=Haloplanus *

|2={{clade

|1={{clade

|1={{clade

|1=Halalkalirubrum

|2={{clade

|1=Natronocalculus

|2={{clade

|1=Halohasta

|2=Halonotius

}}

}}

}}

|2={{clade

|1=Halogranum *

|2={{clade

|1=Halobium

|2={{clade

|1=Halegenticoccus *

|2=Haloprofundus *

}}

}}

}}

}}

|2={{clade

|1=Salinigranum

|2={{clade

|1=Haloferax *

|2={{clade

|1=Halopelagius *

|2={{clade

|1=Halogeometricum *

|2=Halobellus * (incl. Haloquadratum *)

}}

}}

}}

}}

}}

}}

}}

}}

}}

}}

|

{{Clade|style=font-size:90%; line-height:90%

|label1=Haloferacaceae

|1={{clade

|1=Salinirubrum corrig. Cui & Qiu 2014

|2={{clade

|1={{clade

|1=Haloplanus Elevi Bardavid et al. 2007

|2={{clade

|1={{clade

|1=Halobium Mori et al. 2016

|2={{clade

|1=Halogranum Cui et al. 2010

|2={{clade

|1=Halegenticoccus Liu et al. 2020

|2=Haloprofundus Zhang et al. 2017

}}

}}

}}

|2={{clade

|1=Salinigranum Cui & Zhang 2014

|2={{clade

|1=Haloferax Torreblanca et al. 1986

|2={{clade

|1=Halopelagius Cui et al. 2010

|2={{clade

|1=Halogeometricum Montalvo-Rodriguez et al. 1998

|2={{clade

|1=Haloquadratum Burns et al. 2007

|2=Halobellus Cui et al. 2011

}}

}}

}}

}}

}}

}}

}}

|2={{clade

|1={{clade

|1=Halobaculum Oren et al. 1995

|2=Halolamina Cui et al. 2011

}}

|2={{clade

|1={{clade

|1={{clade

|1="Halalkalirubrum" Zuo et al. 2021

|2="Natronocalculus" Sorokin et al. 2023

}}

|2={{clade

|1=Halohasta Mou et al. 2013

|2=Halonotius Burns et al. 2010

}}

}}

|2={{clade

|1=Halalkaliarchaeum Sorokin et al. 2019

|2={{clade

|1=Halopenitus Amoozegar et al. 2012

|2={{clade

|1=Haloparvum Chen et al. 2016

|2=Halorubrum McGenity & Grant 1996

}}

}}

}}

}}

}}

}}

}}

}}

Note: * Haloferacaceae

See also

References

{{Wikispecies}}

{{Reflist}}

{{Portal bar|Biology}}

{{Archaea classification}}

{{Taxonbar|from=Q25936362}}

Category:Halobacteria

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