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MirGeneDB

{{infobox biodatabase

|title = MirGeneDB

|logo =File:Icon MirGeneDB2.png

|description = MirGeneDB is a database of manually curated microRNA genes that have been validated and annotated by experts.

|scope =

|organism =

|center = Arctic University of Norway, Science for Life Laboratory, Oslo University Hospital, Dartmouth College

|laboratory =

|author = Bastian Fromm & Kevin J. Peterson

|citation = Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U Umu, Peter J Chabot, Wenjing Kang, Morteza Aslanzadeh, Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R Friedländer, Kevin J Peterson, MirGeneDB 2.1: toward a complete sampling of all major animal phyla, Nucleic Acids Research, 2021, https://doi.org/10.1093/nar/gkab1101

|released = 2015, 2020, 2021

|standard =

|format =

|url = http://www.mirgenedb.org/

|download =

|webservice =

|sql =

|sparql =

|webapp =

|standalone =

|license =

|versioning =

|frequency =

|curation = manual

|bookmark =

|version= 2.1

}}

MirGeneDB is a database of manually curated microRNA genes that have been validated and annotated as initially described in Fromm et al. 2015{{Cite journal|last1=Fromm|first1=Bastian|last2=Billipp|first2=Tyler|last3=Peck|first3=Liam E.|last4=Johansen|first4=Morten|last5=Tarver|first5=James E.|last6=King|first6=Benjamin L.|last7=Newcomb|first7=James M.|last8=Sempere|first8=Lorenzo F.|last9=Flatmark|first9=Kjersti|last10=Hovig|first10=Eivind|last11=Peterson|first11=Kevin J.|date=2015-11-23|title=A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome|journal=Annual Review of Genetics|language=en|volume=49|issue=1|pages=213–242|doi=10.1146/annurev-genet-120213-092023|issn=0066-4197|pmc=4743252|pmid=26473382}} and Fromm et al. 2020.{{Cite journal|last1=Fromm|first1=Bastian|last2=Domanska|first2=Diana|last3=Høye|first3=Eirik|last4=Ovchinnikov|first4=Vladimir|last5=Kang|first5=Wenjing|last6=Aparicio-Puerta|first6=Ernesto|last7=Johansen|first7=Morten|last8=Flatmark|first8=Kjersti|last9=Mathelier|first9=Anthony|last10=Hovig|first10=Eivind|last11=Hackenberg|first11=Michael|date=2020-01-08|title=MirGeneDB 2.0: the metazoan microRNA complement|url=https://academic.oup.com/nar/article/48/D1/D132/5584683|journal=Nucleic Acids Research|language=en|volume=48|issue=D1|pages=D132–D141|doi=10.1093/nar/gkz885|issn=0305-1048|pmc=6943042|pmid=31598695}} MirGeneDB 2.1{{Cite journal|last1=Fromm|first1=Bastian|last2=Høye|first2=Eirik|last3=Domanska|first3=Diana|last4=Zhong|first4=Xiangfu|last5=Aparicio-Puerta|first5=Ernesto|last6=Ovchinnikov|first6=Vladimir|last7=Umu|first7=Sinan U|last8=Chabot|first8=Peter J|last9=Kang|first9=Wenjing|last10=Aslanzadeh|first10=Morteza|last11=Tarbier|first11=Marcel|date=2021-11-25|title=MirGeneDB 2.1: toward a complete sampling of all major animal phyla|url=https://doi.org/10.1093/nar/gkab1101|journal=Nucleic Acids Research|volume=50|issue=D1|pages=D204–D210|doi=10.1093/nar/gkab1101|pmid=34850127|pmc=8728216|issn=0305-1048}} includes more than 16,000 microRNA gene entries representing more than 1,500 miRNA families from 75 metazoan species and published in the 2022 NAR database issue. All microRNAs can be browsed, searched and downloaded.

References

{{reflist}}

External links

  • {{official website|https://mirgenedb.org}}

Category:MicroRNA

Category:Biological databases