User:Daniel Mietchen/Talks/Open Science Days 2014

• Harnack House
• Stefan Hell
• STED microscopy
• Berlin Declaration
• Open Science aboard the MS Wissenschaft

• Number of people in the audience?
• :50
• Who has ever written a research article that finally got published?
• :42
• Who has ever written a research article that finally got published under an open license?
• :6.5
• Who has ever reviewed a research article?
• :10
• Who has ever signed their review of a research article?
• :2
• Who has ever used research datasets or scientific software published by others?
• :10
• Who has ever contributed to research datasets or scientific software published under an open license?
• :10
• Who has ever got scooped?
• :0
• Who has ever read a Wikipedia article (in any language)?
• :50
• Who has ever contributed to a Wikipedia article (in any language)?
• :13

• [https://en.wikipedia.org/w/index.php?title={{FULLPAGENAMEE}}&action=render HTML]
• [https://en.wikipedia.org/w/index.php?title={{FULLPAGENAMEE}}&action=purge Wiki]
• [https://en.wikipedia.org/w/index.php?title=Special:Book&bookcmd=render_article&arttitle={{FULLPAGENAMEE}}&oldid={{REVISIONID}}&writer=rl PDF]
• [https://en.wikipedia.org/w/index.php?title=Special:Export&pages={{FULLPAGENAMEE}}&action=submit XML]

File:Open research.ogv has been submitted to explore funding opportunities for open research.]]

• ''A figure from a recent paper:{{Cite journal | last1 = Lescroël | first1 = A. L. | last2 = Ballard | first2 = G. | last3 = Grémillet | first3 = D. | last4 = Authier | first4 = M. | last5 = Ainley | first5 = D. G. | editor1-last = Descamps | editor1-first = Sébastien | title = Antarctic Climate Change: Extreme Events Disrupt Plastic Phenotypic Response in Adélie Penguins | doi = 10.1371/journal.pone.0085291 | journal = PLoS ONE | volume = 9 | issue = 1 | pages = e85291 | year = 2014 | pmid =

24489657| pmc =

3906005}}''

File:Automated weighbridge for Adélie penguins - journal.pone.0085291.g002.pngs are identified and weighed each time they cross the automated weighbridge on their way to and from the sea. The data are recorded but not made public, not even in or alongside the "publication".]]

• Two videos providing the basis for an article{{Cite journal | last1 = Yanashima | first1 = R. | last2 = García | first2 = A. A. | last3 = Aldridge | first3 = J. | last4 = Weiss | first4 = N. | last5 = Hayes | first5 = M. A. | last6 = Andrews | first6 = J. H. | editor1-last = Docoslis | editor1-first = Aristides | title = Cutting a Drop of Water Pinned by Wire Loops Using a Superhydrophobic Surface and Knife | doi = 10.1371/journal.pone.0045893 | journal = PLoS ONE | volume = 7 | issue = 9 | pages = e45893 | year = 2012 | pmid = 23029297| pmc =3454355 }} but not published along with it.

• [http://topicpages.ploscompbiol.org/wiki/Topic_Pages To]
• [https://en.wikipedia.org/w/index.php?title=Dengue_fever&diff=629402504&oldid=629336708 From]

• Start GLAMorous: [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Open+access+%28publishing%29&use_globalusage=1&ns0=1&show_details=1&depth=5&projects[wikipedia]=1&projects[wikimedia]=1&projects[wikisource]=1&projects[wikibooks]=1&projects[wikiquote]=1&projects[wiktionary]=1&projects[wikinews]=1&projects[wikivoyage]=1&projects[wikispecies]=1&projects[mediawiki]=1&projects[wikidata]=1&projects[wikiversity]=1 1] [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Uploaded+with+Open+Access+Media+Importer&use_globalusage=1&ns0=1&show_details=1&depth=5&projects[wikipedia]=1&projects[wikimedia]=1&projects[wikisource]=1&projects[wikibooks]=1&projects[wikiquote]=1&projects[wiktionary]=1&projects[wikinews]=1&projects[wikivoyage]=1&projects[wikispecies]=1&projects[mediawiki]=1&projects[wikidata]=1&projects[wikiversity]=1 2]
• [http://tools.wmflabs.org/cite-o-meter/ Wikipedia Cite-o-Meter]
• [http://tools.wmflabs.org/cite-o-meter/index.php?lang=en English Wikipedia]
• [http://tools.wmflabs.org/cite-o-meter/index.php?lang=vi Vietnamese Wikipedia]
• [http://tools.wmflabs.org/cite-o-meter/index.php?doip=10.1371 PLOS]
• [http://tools.wmflabs.org/cite-o-meter/index.php?doip=10.1016 Elsevier]
• [http://tools.wmflabs.org/cite-o-meter/index.php?commons= Wikimedia Commons]
• [http://crosstech.crossref.org/2014/08/citation-needed.html We're working on identifiers]
• Check GLAMorous: [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Open+access+%28publishing%29&use_globalusage=1&ns0=1&show_details=1&depth=5&projects[wikipedia]=1&projects[wikimedia]=1&projects[wikisource]=1&projects[wikibooks]=1&projects[wikiquote]=1&projects[wiktionary]=1&projects[wikinews]=1&projects[wikivoyage]=1&projects[wikispecies]=1&projects[mediawiki]=1&projects[wikidata]=1&projects[wikiversity]=1 Open access (publishing)]
• BaGLAMa: [http://tools.wmflabs.org/glamtools/baglama2/#gid=97&month=201408 Open access]

• [http://listen.hatnote.com/ Listen to Wikipedia]
• [http://wikipulse.herokuapp.com/ Wikipulse]
• [http://www.lkozma.net/wpv/index.html Map of recent edits]
• [http://wikistream.inkdroid.org/ Wikistream]
• [http://stats.wikimedia.org/wikimedia/animations/growth/AnimationProjectsGrowthWp.html Wikimedia project growth animation]
• [https://wikipedia-irc.herokuapp.com/ Wikipedia live monitor]
• [http://toolserver.org/~emijrp/wikimediacounter/ Wikimedia counter]
• [http://seealso.org/ See also].org

An example of open science - from the original proposal to all outputs.

• :commons:User:Open Access Media Importer Bot (OAMI)
• Check GLAMorous [http://tools.wmflabs.org/glamtools/glamorous.php?doit=1&category=Uploaded+with+Open+Access+Media+Importer&use_globalusage=1&ns0=1&show_details=1&depth=5&projects[wikipedia]=1&projects[wikimedia]=1&projects[wikisource]=1&projects[wikibooks]=1&projects[wikiquote]=1&projects[wiktionary]=1&projects[wikinews]=1&projects[wikivoyage]=1&projects[wikispecies]=1&projects[mediawiki]=1&projects[wikidata]=1&projects[wikiversity]=1 OAMI]
• [http://tools.wmflabs.org/glamtools/baglama2/#gid=129&month=201408 BaGLAMa]
• :File:Xanthichthys ringens - pone.0010676.g191.png is sourced from an open-access scholarly article{{Cite journal

| last1 = Williams | first1 = J. T.

| last2 = Carpenter | first2 = K. E.

| last3 = Van Tassell | first3 = J. L.

| last4 = Hoetjes | first4 = P.

| last5 = Toller | first5 = W.

| last6 = Etnoyer | first6 = P.

| last7 = Smith | first7 = M.

| editor1-last = Gratwicke

| editor1-first = Brian

| title = Biodiversity Assessment of the Fishes of Saba Bank Atoll, Netherlands Antilles

| doi = 10.1371/journal.pone.0010676

| journal = PLoS ONE

| volume = 5

| issue = 5

| pages = e10676

| year = 2010

| pmid = 20505760

| pmc = 2873961

}}

File:Cc-zero.svg [http://creativecommons.org/publicdomain/zero/1.0/ CC0]

{{sister-inline

|project=wikisource

|short=yes

|links=full text

}}

{{sister-inline

|project=commons

|short=yes

|links=media

}}

{{sister-inline

|project=wikidata

|short=yes

|links=metadata

}}

licensed for re-use (details).]]

• Expansion to full-text import
• Wikipedia Zero
• Wikisource is included
• SciELO content is available in JATS, soon in PMC
• Problem: Inconsistent XML as a Barrier to Reuse of Open Access ContentMietchen, D.; Maloney, C.; and Moskopp, N. D. (2013) [http://www.ncbi.nlm.nih.gov/books/NBK159964/ Inconsistent XML as a Barrier to Reuse of Open Access Content]. Journal Article Tag Suite Conference (JATS-Con) Proceedings 2013.
• [http://jats4r.github.io/ JATS4R] is trying to address this

{{reflist}}

This page forms part of a talk given on October 14, 2014 at the [http://osd.mpdl.mpg.de/?page_id=15 Open Science Days 2014] at the Harnack House in Berlin.

• Some related talks
• COASP 2014
• Open Science Rio 2014
• Schloss Ringberg Symposium 2014
• JATS-Con 2014
• CERN 2012
• Open Science Summit 2011

• [http://www.naturkundemuseum-berlin.de/en/institution/mitarbeiter/mietchen-daniel/ Institutional]
• @[https://twitter.com/EvoMRI EvoMRI] on Twitter
• Wikipedia talk page
• Wikipedia email