User:Fnielsen#Scientific citations in Wikipedia

File:Skallerupvognen.jpg. Taken as part of the collaborative project "Wikipedia Loves Nationalmuseet".]]

File:Gammel Lundtoftevej ved Åstræde, 2008-05-04.jpg.]]

File:Halvcirklen, Ravnholm, 2011-10-01.jpg

I have been active on the English and Danish versions of Wikipedia, with the first English Wikipedia [http://en.wikipedia.org/w/index.php?title=Functional_MRI&oldid=339858 entry] August 23 2002 and the first Danish February 11 2002.

Among the articles I have added to are non-negative matrix factorization, ratio distribution, intraclass correlation, Niels A. Lassen, John Lykoudis and 5-HTTLPR.

My English edits have usually been related to my work.

On the Danish Wikipedia I usually write articles that are not related to my work.

I also take photos for Wikimedia Commons. Most photos have been of Copenhagen and suburbs.

(I have a sandbox as a subpage where I try to understand Wikipedia tables, templates, substitutions, transclusions and other technical details of Wikipedia.)

I am a member of Wikimedia Denmark, and presently is a member of the board.

I have been at Wikimania in Alexandria, Gdansk and London.

I have made a tool that converts a PubMed/MEDLINE identifier, PMID, to a cite journal template.

As of 2008 it is available from [http://neuro.compute.dtu.dk/cgi-bin/brede_bib_pmid2wpcitejournal.py]

On the Toolserver I had a online visualization service called revvis.

Enabled for the Danish Wikipedia, it shows the sequential collaboration network for a Wikipedia article.

The most recent Toolforge tools are Scholia, Wembedder, CVRminer and Ordia.

I participated in WikiSym 2006 in Odense and had a short talk in the workshop about Wikipedia research organized by Jakob Voß and Angela Beesley.

The slides used for the presentation are available from the department archiveFinn Årup Nielsen, Wiki(pedia) and neuroinformatics, 2006 August 23. [http://www2.imm.dtu.dk/pubdb/views/publication_details.php?id=4748]:

Non-negative matrix factorization decomposed a article-by-author data matrix for identification of clusters of authors and articles.

In 2007 I looked at the outbound citations from Wikipedia (using Template:Cite journal) to scientific journals.{{Cite journal

| author = Finn Årup Nielsen

| title = Scientific citations in Wikipedia

| journal = First Monday

| volume = 12

| issue = 8

| month = August

| year = 2007

| url = http://www.firstmonday.org/issues/issue12_8/nielsen/

}}

Nature and Science were the most cited.

I compared the number of citations with citation information from Journal Citation Reports of Thomson Scientific, and the correlation between the two sets of values was not bad, e.g., when a scientific journal had many citations it tended to also have many Wikipedia citations.

An updated scatter plot for the July 2007 database dump is available [http://www2.imm.dtu.dk/~fn/Nielsen2007Scientific.html].

I also tried to cluster scientific journals and Wikipedia articles and made a longitudinal comparison of the citation information.

This is described in [http://www2.imm.dtu.dk/pubdb/views/edoc_download.php/5666/pdf/imm5666.pdf Clustering of scientific citations in Wikipedia].

The data set used for the clustering is available from the homepage [http://neuro.imm.dtu.dk/services/wikipedia/citejournalminer.html] and a couple of researcher have used it to test machine learning algorithms, see the [http://scholar.google.com/scholar?cites=1558470177834125692 references on Google Scholar].

I am experimenting with representing scientific data in a wiki-like environment. My first attempt was a spreadsheet link online service for personality genetics. It is available from:

: http://neuro.imm.dtu.dk/cgi-bin/brede_wiki_personalitygenetics

I now mostly work with the "Brede Wiki".

: http://neuro.imm.dtu.dk/wiki/

This MediaWiki-based wiki can represent spreadsheet-like data and meta-analysis is presently performed with an online script.

On Wikimania 2010 I tried to argue for a way to represent scientific data in Wikipedia: Wikipedia is not the sum of all human knowledge.

I look forward to see how Wikidata can be used for such data.

Since 2008 I have been writing a review on Wiki and Wikipedia research entitled [http://www2.imm.dtu.dk/pubdb/views/edoc_download.php/6012/pdf/imm6012.pdf Wikipedia research and tools: Review and comments].

I now collaborate with fellow researchers (Chitu Okoli and others) on the Internet to summarize and review Wikipedia research. We presently have a long working paper entitled The people's encyclopedia under the gaze of the sages: a systematic review of scholarly research on Wikipedia, see at http://ssrn.com/abstract=2021326 . We maintain the data for the review on a Semantic MediaWiki at http://wikilit.referata.com. The setup of this wiki was inspired by WikiPapers (http://wikipapers.referata.com) at and my Brede Wiki.

I have also written a popular science overview of Wikipedia research in Danish: [http://www2.imm.dtu.dk/pubdb/views/edoc_download.php/5652/pdf/imm5652.pdf Wikipedia - nørdernes sejr over vandalerne?].

I maintain blogs where I sometimes write posts relating to Wikipedia. These may be opinionated or related to my work. I was originally writing from Posterous, but as this is closed down Wikipedia posts from my blogs can be found here:

: http://finnaarupnielsen.wordpress.com/tag/wikipedia/

: http://fnielsen.tumblr.com/tagged/wikipedia (nothing here yet)

Examples of blog posts are:

• [http://finnaarupnielsen.wordpress.com/2011/05/18/hunting-down-the-undead-ghost-of-classical-co/ Hunting down the undead ghost of classical conductor George Richter] — the story about an article about a conductor that I added to Wikipedia, but later was deleted as it turned out that he was ficticious.
• [http://finnaarupnielsen.wordpress.com/2013/01/09/sentiment-analysis-of-wikipedia-pages-on-dani/ Sentiment analysis of Wikipedia pages on Danish politicians].

• "Blaming" tools:
• WikiChanges
• Hauptautoren de:Wikipedia:Hauptautoren [http://de.wikipedia.org/wiki/Wikipedia:Hauptautoren]
• User edit counting:
• [http://toolserver.org/~river/cgi-bin/count_edits?user=fnielsen&dbname=dawiki_p "River" (Danish)]
• Overall statistics:
• [http://en.wikichecker.com/user/?t=fnielsen Wikichecker]. User profiling
• Xiong Changnian's Wikipedia:Xiong's stats. Also makes some notes about user types.

• User:fnielsen/Book:Music, example book

I am working or have been employed by:

• Technical University of Denmark
• Rigshospitalet

I have received grants from:

• The Lundbeck foundation, - partial owner of Lundbeck.
• Villum Foundation associated with VELUX.
• Danish Research Councils.
• American research councils.

I received gifts associated with:

• Klovn
• Frank Hvam
• Packt

• Religion in communism in Sub-Saharan Africa in the 1960s. A podcast refered humorously to this page.

== List of publications ==

• {{Cite journal

| title = Scholia - March 2017

| journal = Zenodo

| date = 2017-03-13

| volume =

| issue =

| pages =

| doi = 10.5281/ZENODO.376859

| url =

}}

• {{Cite journal

| title = Scholia and scientometrics with Wikidata

| journal = arXiv

| date = 2017-03-13

| volume =

| issue =

| pages =

| doi =

| url = https://arxiv.org/pdf/1703.04222.pdf

}}

• {{Cite journal

| title = Excavating the mother lode of human-generated text: A systematic review of research that uses the wikipedia corpus

| journal = Information Processing & Management

| date = 2017-03-01

| volume = 53

| issue = 2

| pages = 505-529

| doi = 10.1016/J.IPM.2016.07.003

| url =

}}

• {{Cite journal

| title = Literature, Geolocation and Wikidata

| journal = Wiki: Papers from the 2016 ICWSM Workshop

| date = 2016-05-01

| volume =

| issue =

| pages =

| doi =

| url = http://snap.stanford.edu/wikiworkshop2016/papers/wikiworkshop_icwsm2016_nielsen.pdf

}}

• {{Cite journal

| title = Literature, Geolocation and Wikidata

| journal = Wiki: Papers from the 2016 ICWSM Workshop

| date = 2016-05-01

| volume =

| issue =

| pages =

| doi =

| url = http://www2.compute.dtu.dk/pubdb/views/edoc_download.php/6934/pdf/imm6934.pdf

}}

• {{Cite journal

| title = Literature, Geolocation and Wikidata

| journal = Wiki: Papers from the 2016 ICWSM Workshop

| date = 2016-05-01

| volume =

| issue =

| pages =

| doi =

| url = https://www.aaai.org/ocs/index.php/ICWSM/ICWSM16/paper/download/13201/12876

}}

• {{Cite journal

| title = The Center for Integrated Molecular Brain Imaging (Cimbi) database

| journal = NeuroImage

| date = 2016-01-01

| volume = 124

| issue = Pt B

| pages = 1213-1219

| doi = 10.1016/J.NEUROIMAGE.2015.04.025

| url =

}}

• {{Cite journal

| title = Collective remembering of organizations: Co-construction of organizational pasts in Wikipedia

| journal = Corporate Communications

| date = 2015-10-05

| volume = 20

| issue = 4

| pages = 431-447

| doi = 10.1108/CCIJ-09-2014-0059

| url =

}}

• {{Cite journal

| title = Strategies of Legitimacy Through Social Media: The Networked Strategy

| journal = Journal of Management Studies

| date = 2015-08-06

| volume = 53

| issue = 3

| pages = 402-432

| doi = 10.1111/JOMS.12145

| url =

}}

• {{Cite journal

| title = "The sum of all human knowledge": A systematic review of scholarly research on the content of Wikipedia

| journal = Journal of the Association for Information Science and Technology

| date = 2015-02-01

| volume = 66

| issue = 2

| pages = 219-245

| doi = 10.1002/ASI.23172

| url =

}}

• {{Cite journal

| title = Online open neuroimaging mass meta-analysis with a wiki

| journal = The Semantic Web: ESWC 2012 Satellite Events

| date = 2015-01-01

| volume =

| issue =

| pages = 259-271

| doi = 10.1007/978-3-662-46641-4_19

| url =

}}

• {{Cite journal

| title = Wikipedia in the eyes of its beholders: A systematic review of scholarly research on Wikipedia readers and readership

| journal = Journal of the Association for Information Science and Technology

| date = 2014-07-08

| volume = 65

| issue = 12

| pages = 2381–2403

| doi = 10.1002/ASI.23162

| url =

}}

• {{Cite journal

| title = Action and language mechanisms in the brain: data, models and neuroinformatics

| journal = Neuroinformatics

| date = 2014-01-01

| volume = 12

| issue = 1

| pages = 209-225

| doi = 10.1007/S12021-013-9210-5

| url =

}}

• {{Cite journal

| title = Brede tools and federating online neuroinformatics databases

| journal = Neuroinformatics

| date = 2014-01-01

| volume = 12

| issue = 1

| pages = 27-37

| doi = 10.1007/S12021-013-9183-4

| url =

}}

• {{Cite journal

| title = The People’s Encyclopedia Under the Gaze of the Sages: A Systematic Review of Scholarly Research on Wikipedia

| journal = Social Science Research Network

| date = 2012-03-17

| volume =

| issue =

| pages =

| doi = 10.2139/SSRN.2021326

| url = https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2021326

}}

• {{Cite journal

| title = Wikipedia research and tools: review and comments

| journal =

| date = 2012-02-06

| volume =

| issue =

| pages =

| doi = 10.2139/SSRN.2129874

| url =

}}

• {{Cite journal

| title = A New ANEW: Evaluation of a Word List for Sentiment Analysis in Microblogs

| journal = Proceedings of the ESWC2011 Workshop on 'Making Sense of Microposts': Big things come in small packages

| date = 2011-05-01

| volume =

| issue =

| pages = 93-98

| doi =

| url = http://ceur-ws.org/Vol-718/paper_16.pdf

}}

• {{Cite journal

| title = Serotonin transporter binding in the hypothalamus correlates negatively with tonic heat pain ratings in healthy subjects: a [11C]DASB PET study

| journal = NeuroImage

| date = 2011-01-15

| volume = 54

| issue = 2

| pages = 1336-1343

| doi = 10.1016/J.NEUROIMAGE.2010.09.010

| url =

}}

• {{Cite journal

| title = Good Friends, Bad News - Affect and Virality in Twitter

| journal = Future Information Technology

| date = 2011-01-01

| volume = 185

| issue =

| pages = 34-43

| doi = 10.1007/978-3-642-22309-9_5

| url =

}}

• {{Cite journal

| title = Endogenous plasma estradiol in healthy men is positively correlated with cerebral cortical serotonin 2A receptor binding

| journal = Psychoneuroendocrinology

| date = 2010-10-01

| volume = 35

| issue = 9

| pages = 1311-1320

| doi = 10.1016/J.PSYNEUEN.2010.03.002

| url =

}}

• {{Cite journal

| title = Seasonal changes in brain serotonin transporter binding in short serotonin transporter linked polymorphic region-allele carriers but not in long-allele homozygotes

| journal = Biological Psychiatry

| date = 2010-06-01

| volume = 67

| issue = 11

| pages = 1033-1039

| doi = 10.1016/J.BIOPSYCH.2009.11.027

| url =

}}

• {{Cite journal

| title = A nonlinear relationship between cerebral serotonin transporter and 5-HT(2A) receptor binding: an in vivo molecular imaging study in humans

| journal = Journal of Neuroscience

| date = 2010-03-03

| volume = 30

| issue = 9

| pages = 3391-3397

| doi = 10.1523/JNEUROSCI.2852-09.2010

| url = http://www.jneurosci.org/content/30/9/3391.full.pdf

}}

• {{Cite journal

| title = A fielded wiki for personality genetics

| journal = Proceedings of the 6th International Symposium on Wikis and Open Collaboration

| date = 2010-01-01

| volume =

| issue =

| pages =

| doi =

| url =

}}

• {{Cite journal

| title = BredeQuery: Coordinate-Based Meta-analytic Search of Neuroscientific Literature from the SPM Environment

| journal = Biomedical Engineering Systems and Technologies

| date = 2010-01-01

| volume =

| issue =

| pages = 314-324

| doi = 10.1007/978-3-642-11721-3_24

| url =

}}

• {{Cite journal

| title = Lost in localization: a solution with neuroinformatics 2.0?

| journal = NeuroImage

| date = 2009-10-15

| volume = 48

| issue = 1

| pages = 11-3

| doi = 10.1016/J.NEUROIMAGE.2009.05.073

| url =

}}

• {{Cite journal

| title = Visualizing data mining results with the Brede tools

| journal = Frontiers in Neuroinformatics

| date = 2009-07-28

| volume = 3

| issue =

| pages =

| doi = 10.3389/NEURO.11.026.2009

| url =

}}

• {{Cite journal

| title = The personality trait openness is related to cerebral 5-HTT levels

| journal = NeuroImage

| date = 2009-04-01

| volume = 45

| issue = 2

| pages = 280-285

| doi = 10.1016/J.NEUROIMAGE.2008.12.001

| url =

}}

• {{Cite journal

| title = Brede Wiki: A neuroinformatics Web service with structured information

| journal = Frontiers in Neuroinformatics

| date = 2009-01-01

| volume =

| issue =

| pages =

| doi = 10.3389/CONF.NEURO.11.2009.08.072

| url =

}}

• {{Cite journal

| title = Frontolimbic serotonin 2A receptor binding in healthy subjects is associated with personality risk factors for affective disorder

| journal = Biological Psychiatry

| date = 2008-03-15

| volume = 63

| issue = 6

| pages = 569-576

| doi = 10.1016/J.BIOPSYCH.2007.07.009

| url =

}}

• {{Cite journal

| title = Clustering of scientific citations in Wikipedia

| journal =

| date = 2008-01-01

| volume =

| issue =

| pages =

| doi =

| url = http://www2.imm.dtu.dk/pubdb/views/edoc_download.php/5666/pdf/imm5666.pdf

}}

• {{Cite journal

| title = Scientific citations in Wikipedia

| journal = First Monday

| date = 2007-08-01

| volume = 12

| issue = 8

| pages =

| doi = 10.5210/FM.V12I8.1997

| url = http://firstmonday.org/article/view/1997/1872

}}

• {{Cite journal

| title = Cerebral 5-HT2A receptor binding is increased in patients with Tourette's syndrome

| journal = The International Journal of Neuropsychopharmacology

| date = 2007-04-01

| volume = 10

| issue = 2

| pages = 245-252

| doi = 10.1017/S1461145706006559

| url = http://ijnp.oxfordjournals.org/content/10/2/245.full.pdf

}}

• {{Cite journal

| title = Similar brain networks for detecting visuo-motor and visuo-proprioceptive synchrony

| journal = NeuroImage

| date = 2006-05-15

| volume = 31

| issue = 1

| pages = 308-312

| doi = 10.1016/J.NEUROIMAGE.2005.11.037

| url =

}}

• {{Cite journal

| title = fMRI neuroinformatics

| journal = IEEE Engineering in Medicine and Biology Magazine

| date = 2006-03-01

| volume = 25

| issue = 2

| pages = 112-119

| doi = 10.1109/MEMB.2006.1607675

| url =

}}

• {{Cite journal

| title = Mining the posterior cingulate: segregation between memory and pain components

| journal = NeuroImage

| date = 2005-09-01

| volume = 27

| issue = 3

| pages = 520-532

| doi = 10.1016/J.NEUROIMAGE.2005.04.034

| url =

}}

• {{Cite journal

| title = Right temporoparietal cortex activation during visuo-proprioceptive conflict

| journal = Cerebral Cortex

| date = 2005-02-01

| volume = 15

| issue = 2

| pages = 166-169

| doi = 10.1093/CERCOR/BHH119

| url = http://cercor.oxfordjournals.org/content/15/2/166.long

}}

• {{Cite journal

| title = Right temporoparietal cortex activation during visuo-proprioceptive conflict

| journal = Cerebral Cortex

| date = 2005-02-01

| volume = 15

| issue = 2

| pages = 166-169

| doi = 10.1093/CERCOR/BHH119

| url = https://academic.oup.com/cercor/article-pdf/15/2/166/982467/bhh119.pdf

}}

• {{Cite journal

| title = Mass meta-analysis in Talairach space

| journal = Proceedings of the 17th International Conference on Neural Information Processing Systems

| date = 2004-11-01

| volume =

| issue =

| pages = 985-992

| doi =

| url = https://papers.nips.cc/paper/2614-mass-meta-analysis-in-talairach-space.pdf

}}

• {{Cite journal

| title = Finding related functional neuroimaging volumes

| journal = Artificial Intelligence in Medicine

| date = 2004-02-01

| volume = 30

| issue = 2

| pages = 141-151

| doi = 10.1016/S0933-3657(03)00041-1

| url =

}}

• {{Cite journal

| title = Mining for associations between text and brain activation in a functional neuroimaging database

| journal = Neuroinformatics

| date = 2004-01-01

| volume = 2

| issue = 4

| pages = 369-380

| doi = 10.1385/NI:2:4:369

| url =

}}

• {{Cite journal

| title = Exploring fMRI data for periodic signal components

| journal = Artificial Intelligence in Medicine

| date = 2002-05-01

| volume = 25

| issue = 1

| pages = 35-44

| doi = 10.1016/S0933-3657(02)00007-6

| url =

}}

• {{Cite journal

| title = Modeling of activation data in the BrainMap database: detection of outliers

| journal = Human Brain Mapping

| date = 2002-03-01

| volume = 15

| issue = 3

| pages = 146-156

| doi = 10.1002/HBM.10012

| url =

}}

• {{Cite journal

| title = Cluster analysis of activity-time series in motor learning

| journal = Human Brain Mapping

| date = 2002-03-01

| volume = 15

| issue = 3

| pages = 135-145

| doi = 10.1002/HBM.10015

| url =

}}

• {{Cite journal

| title = Neuroinformatics in Functional Neuroimaging

| journal =

| date = 2002-01-01

| volume =

| issue =

| pages =

| doi =

| url = http://www2.imm.dtu.dk/pubdb/views/edoc_download.php/201/pdf/imm201.pdf

}}

• {{Cite journal

| title = Cluster analysis of activity-time series in motor learning

| journal = Human Brain Mapping

| date = 2001-12-27

| volume = 15

| issue = 3

| pages = 135-145

| doi = 10.1002/HBM.10015

| url =

}}

• {{Cite journal

| title = Extracting collective probabilistic forecasts from web games

| journal = Proceedings of the seventh ACM SIGKDD international conference on Knowledge discovery and data mining

| date = 2001-08-01

| volume =

| issue =

| pages = 174-183

| doi = 10.1145/502512.502537

| url =

}}

• {{Cite journal

| title = Consensus inference in neuroimaging

| journal = NeuroImage

| date = 2001-06-01

| volume = 13

| issue = 6 Pt 1

| pages = 1212-1218

| doi = 10.1006/NIMG.2000.0718

| url =

}}

• {{Cite journal

| title = Persistence of Web References in Scientific Research

| journal = Computer

| date = 2001-03-01

| volume = 34

| issue = 3

| pages = 26-31

| doi = 10.1109/2.901164

| url =

}}

• {{Cite journal

| title = The real power of artificial markets

| journal = Science

| date = 2001-02-09

| volume = 291

| issue = 5506

| pages = 987-988

| doi = 10.1126/SCIENCE.291.5506.987

| url =

}}

• {{Cite journal

| title = Modeling the haemodynamic response in fMRI using smooth FIR filters

| journal = IEEE Transactions on Medical Imaging

| date = 2000-12-01

| volume = 19

| issue = 12

| pages = 1188-1201

| doi = 10.1109/42.897811

| url =

}}

• {{Cite journal

| title = Modeling text with generalizable Gaussian mixtures

| journal = Proceedings of the 2000 IEEE International Conference on Acoustics, Speech, and Signal Processing

| date = 2000-06-01

| volume =

| issue =

| pages =

| doi = 10.1109/ICASSP.2000.860154

| url =

}}

• {{Cite journal

| title = Persistence of information on the web: analyzing citations contained in research articles

| journal = Proceedings of the ninth international conference on Information and knowledge management

| date = 2000-01-01

| volume =

| issue =

| pages = 235-242

| doi = 10.1145/354756.354824

| url =

}}

• {{Cite journal

| title = Plurality and resemblance in fMRI data analysis

| journal = NeuroImage

| date = 1999-09-01

| volume = 10

| issue = 3 Pt 1

| pages = 282-303

| doi = 10.1006/NIMG.1999.0472

| url =

}}

• {{Cite journal

| title = Generalizable patterns in neuroimaging: how many principal components?

| journal = NeuroImage

| date = 1999-05-01

| volume = 9

| issue = 5

| pages = 534-544

| doi = 10.1006/NIMG.1998.0425

| url =

}}

• {{Cite journal

| title = On clustering fMRI time series

| journal = NeuroImage

| date = 1999-03-01

| volume = 9

| issue = 3

| pages = 298-310

| doi = 10.1006/NIMG.1998.0391

| url =

}}

• {{Cite journal

| title = Interactive information visualization in neuroimaging

| journal = Proceedings of the 1997 workshop on New paradigms in information visualization and manipulation

| date = 1997-01-01

| volume =

| issue =

| pages = 62-65

| doi = 10.1145/275519.275533

| url =

}}

{{Reflist}}

{{Authority control |qid=Q20980928}}

Fnielsen

Fnielsen

da:Bruger:fnielsen

de:Benutzer:fnielsen