Wikipedia:Reference desk/Archives/Science/2012 October 10#baseball hat

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= October 10 =

DNA transcription information doubt

{{anchor|doubt about the information on page}}

Is it correct the below line?

Promoters are located near the genes they transcribe, on the same strand and upstream (towards the 5' region of the anti-sense strand).

How promoters could be located at upstream in anti-sense strand. Because it is the template strand for transcription. Trascription initiates from 3' end in anti-sense strand. So, promoter should be at 3' (towards downstream region) site of the gene in anti-sense strand. — Preceding unsigned comment added by 117.212.219.234 (talk) 11:25, 10 October 2012 (UTC)

:The wording is clumsy. Promoters are 5' to the gene, with "5'" and "3'" defined by the strand encoding the gene. -- Scray (talk) 13:10, 10 October 2012 (UTC)

::Defining which strand it's on seems kind of pointless to me. The promoter is as much on the sense strand as it is on the antisense strand. But there is simply not a simple way to describe a promoter. Promoter elements can be located far upstream from the gene start site, or even downstream, inside other genes, and promoters can overlap one another. One of my professor's from college loved to ask at the beginning of every genetics class he taught, "what is a promoter" (or alternatively, "what is a gene"). Someguy1221 (talk) 23:14, 10 October 2012 (UTC)

:::Promoters can include enhancer elements that can be distant and not upstream, but the core+proximal promoter is 5' of the coding region, near the transcription start site on the sense strand. "Typical" always has exceptions, but this description is quite consistent. -- Scray (talk) 05:27, 11 October 2012 (UTC)

::::The classic exception would be with RNA polymerase III; but usually when people start talking about genes and promoters they're thinking about RNA polymerase II, which handles a huge variety of the "interesting" genes. In any case, there just about has to be something recognizable about some sequence not extremely far from the start of transcription, or else how does it know where to start? At least, I can't really think of a good counterexample offhand, though specific elements like TATA can be absent. Wnt (talk) 01:16, 12 October 2012 (UTC)

SCIATIC NERVE EXPLORATION

{{RD-deleted| Discuss -- Scray (talk) 17:15, 10 October 2012 (UTC)}}

baseball hat

is there any way to tell if a baseball hat has a cardboard or plastic bill before you wash it and have it fall apart? --Wrk678 (talk) 18:22, 10 October 2012 (UTC)

:Even if you can't, you may find [https://www.google.com/#hl=en&sugexp=les%3B&gs_nf=1&tok=HvyO-bzHFFjt-wfQZXMMrw&cp=14&gs_id=1i&xhr=t&q=baseball+cap+washer&pf=p&output=search&sclient=psy-ab&oq=baseball+cap+w&gs_l=&pbx=1&bav=on.2,or.r_gc.r_pw.r_cp.r_qf.&fp=2664c7b9590ae96e&bpcl=35243188&biw=1137&bih=714 this Google search] useful for your purposes. --Jayron32 18:34, 10 October 2012 (UTC)

:You could try sticking a pin through the bill. Plastic presumably will offer more resistance to penetration than cardboard. However, what is your plan if you can't wash it ? Then you have a dirty, unwashable hat. You really need to make this determination before you buy it, to avoid this dilemma later. StuRat (talk) 19:24, 10 October 2012 (UTC)

::Dry cleaning would be an option. A quick test with a piece of cardboard shows no immediate problems. Not that that proves anything... Ssscienccce (talk) 08:19, 11 October 2012 (UTC)

:You might also check the tag inside the cap and see if it has any washing instructions. ←Baseball Bugs What's up, Doc? carrots→ 04:47, 11 October 2012 (UTC)

First environmental science program(me)(s)

I was wondering which college or university established the first environmental science degree program. Googling, I can find a few programs claiming to "one of the first," but no definitive answer. With several ways to define the question, I'd be interested in (1) the first undergraduate program; (2) the first graduate program; (3) the first program in the US; and (4) the first program outside of the US. --BDD (talk) 19:27, 10 October 2012 (UTC)

:Note that there were sanitary engineering (sewage treatment), waste management (garbage collection), and water resources engineering/water treatment programs well before the environmental movement was named, as such. However, those areas have done a great deal to protect the environment and extend lifespans, by preventing the spread of infectious diseases. StuRat (talk) 19:37, 10 October 2012 (UTC)

::It should be noted, however, that much of sanitary engineering originated as an overt attempt to make people's environment more livable. The entire justification for building the London sewerage system was to improve London's environment; to make it more livable. Of course, most people don't start caring about the Environment until they realize that their environment is becoming harmful to them, but selfish preservation is still one of the primary motivating factors in human action. --Jayron32 16:00, 11 October 2012 (UTC)

:::Agreed. Most mainstream environmental movements are still about making life better for humans, although there are a few bizarre movements that call for people to go extinct in order to preserve "Mother Earth". StuRat (talk) 21:34, 12 October 2012 (UTC)

:Note also that "environmental science" means different things to different people. Two important branches are (1) the study of how man's actvities affect the environment, and (2) what things man has to do to cope with what the environment provides. Item (1) has attracted much attention in recent years, but item (2) has been studied for much longer, probably at least 100 years or so. For example, Murdoch University in Australia http://en.wikipedia.org/wiki/Murdoch_University has always had (since the University was established in 1975) courses and research in what they call "environmental science" - these have included such things such as novel types of air-conditioning and energy-efficient buildings. Wickwack124.178.43.122 (talk) 00:58, 11 October 2012 (UTC)

Earth-Moon Recession

I understood that our Moon is receding from Earth about 38 mm/year due to tidal effects. However I was curious to compare this result with metric expansion of space by assuming it applies to Earth Moon system as well. When applying Hubble's law, I found this would give about 29 mm/year. Can this be just an incident?--Almuhammedi (talk) 19:32, 10 October 2012 (UTC)

:Presumably you mean to ask if it's a coincidence ? StuRat (talk) 19:33, 10 October 2012 (UTC)

:: Forgive me for poor English ;). — Preceding unsigned comment added by Almuhammedi (talkcontribs) 19:37, 10 October 2012 (UTC)

:::The metric expansion of space only applies to objects that are not bound to each other by gravity. The earth-moon system is bound by gravity, so it is not affected. --Jayron32 19:42, 10 October 2012 (UTC)

:It is just a coincidence, and the metric expansion of space is not applicable within gravitationally-bound systems; it only applies well above the scale of galaxies. By way of evidence, consider that the magnitude of Earth-Moon tidal acceleration is impacted by the nature of Earth's oceans, which can play no role whatsoever in Hubble's law. — Lomn 19:47, 10 October 2012 (UTC)

::::What Jayron said. μηδείς (talk) 20:05, 10 October 2012 (UTC)

:::::The metric expansion of space does not "expand" bound systems. But I always wondered: It shows up as the cosmological constant in Einsteins equations. Shouldn't it also show up in Newtons equations (as an extremely small modification, of course)? In other words, shouldn't the attraction between two bodies be ever so slightly smaller thanks to it than it would be without it? --Stephan Schulz (talk) 07:25, 11 October 2012 (UTC)

:::::: Yes, there is an effect, [http://arxiv.org/abs/gr-qc/0602002 see here.] Count Iblis (talk) 15:32, 11 October 2012 (UTC)

:::::::Well, that makes sense, because we say that "gravitationally bound systems aren't expanding away from each other", but that's a tautology: what it really means is that systems whose force of gravity is strong enough to overcome the metric expansion of space don't recede from each other. Neither the metric expansion of space nor gravity every stops working, its just that they counteract each other so if gravity is strong enough, the net effect is that the objects don't move away from each other. But gravity doesn't have any extinction; it decreases in strength via the Inverse-square law, but it should never drop to zero for any finite (but arbitrarily large) distance. Thus, everything in the universe is subject to "metric expansion", but you only see objects moving away from each other if the objects are sufficiently far apart already as to be under such a weak influence of each other's gravity that the metric expansion becomes the greater effect. --Jayron32 15:57, 11 October 2012 (UTC)

::::::::Your comment is confusing some things. By the "metric expansion of space" you really mean changes in the cosmological scale factor. The evolution of that scale factor is driven by three processes, inertia, gravity, and dark energy. Most of the expansion we talk about is really the Hubble flow which is a purely inertial process. Specifically, galaxies expand from each other because at the moment of the big bang the primordial universe was imparted with momentum that is still resulting in expansion today. It is like watching the debris from a bomb going off. At the moment of the explosion, a large impulse is imparted to everything, but afterwards the debris continues flying apart without the need for any additional forces. If we could magically turn off gravity and dark energy, the universe would continue to expand. The second process governing the scale factor is gravity. On cosmological scales the sole effect of gravity is to slow the expansion of the scale factor. In a universe with sufficient mass, gravity would eventually win and the expansion would reverse itself leading to a contraction and eventually a big crunch. We do not appear to live in such a universe. However, in the absence of dark energy all you need to consider is gravity and the initial momentum in order to understand the evolution of everything. In order for a system to become gravitationally bound, it must have already shed whatever momentum existed that would have initially had its constituent parts tending to fly apart. Gravitationally bound systems aren't affected by Hubble flow, simply because they have already overcome it in order to form in the first place. In the pure Hubble flow regime there is no any additional force creating expansion, hence gravitationally bound systems would be completely unaffected by Hubble flow. Dark energy is the third wrinkle to the story. On cosmological scales it imparts a force that tends to increase the scale factor. If we assume dark energy takes the form of a cosmological constant, then it can be modeled in the classical limit as a force directly proportional to distance, i.e. F_{dark}(r) = G_{dark}\,m\,r, where the proportionality constant is G_{dark} \approx 9.8 \times 10^{-37} { \text{N} \over \text{kg m} }. For some concrete numbers, the force of the Sun on the Earth is 3.5{{e|22}} N, compared to the dark energy "force" between the Sun and Earth of 0.8 N. In the classical limit, dark energy is always exerting a force, but the magnitude of that force is trivial until you get to cosmologically large distances. Unlike the Hubble flow, which is a passive inertial process baked in at the Big Bang, dark energy is an active process associated with a new force law and one which can create additional expansion. Dragons flight (talk) 20:56, 11 October 2012 (UTC)

:::::::::Yes, I was trying to refer to the positive outward pressure exerted by so-called "dark energy" which is real and active, and as you note insignificant in all but the biggest cases, and not the passive "Hubble flow" which is just the residual momentum of the initial Big Bang. --Jayron32 21:41, 11 October 2012 (UTC)

I'm more like my mother than my father

Through nondisjunction, it should be possible, perhaps inevitable, that some child will inherit two copies of some chromosome from one parent, and zero copies of the same from the other parent. Are there any documented cases of such a thing? Thanks. Someguy1221 (talk) 22:28, 10 October 2012 (UTC)

:Amazingly, we have an article about that: Uniparental disomy. Looie496 (talk) 23:36, 10 October 2012 (UTC)

:Also, don't forget Mitochondrial DNA. {The poster formerly known as 87.81.230.195} 84.21.143.150 (talk) 12:54, 11 October 2012 (UTC)

Genetically modified organisms

Hello, I have a small project for a class where I have to find an example of a genetically modified organism, investigate its basis, and give it's pros and cons. However, "the example must be a viable organism, not a plasmid, vector etc". I am limited to GMOs dealing with viral gene therapy.

However, my understanding of viral gene therapy is that genes are inserted into the virus, which is allowed to replicate in other organism to it's benefit (e.g. cancer killing proteins). Doesn't this therefore qualify the virus as a vector (but equally a GMO)? And thus, is not allowed to be chosen as a topic? Many thanks 93.186.23.80 (talk) 00:40, 11 October 2012 (UTC)

:A virus is not usually considered to be an organism; see our organism article. Looie496 (talk) 00:55, 11 October 2012 (UTC)

  • See the first sentence [http://environmentalcommons.org/gmo-factsheet.html here]. Viral vectors (e.g. retroviruses) can be used to create stable recombinants, a process sometimes called "pharming". The product, not the vector, is a GMO. -- Scray (talk) 01:28, 11 October 2012 (UTC)
  • Here's some fun for you: [http://www.english.rfi.fr/americas/20120920-monsanto-gm-maize-may-face-europe-ban-after-french-study-links-cancer] [http://www.criigen.org/SiteEn/index.php?option=com_content&task=view&id=373&Itemid=131] [http://www.sciencedirect.com/science/article/pii/S0278691512005637] (Roundup Ready). Wnt (talk) 03:25, 12 October 2012 (UTC)

:: excluding genetically engineered plasmids and vectors (which are produced by the truckload on a daily basis in research labs) "viable organisms" are not restricted to just viral gene therapy. Many crops are now genetically engineered (e.g. see golden rice) The links at the very bottom of that page may also help you. Many genetically engineered animals are used to study the effects of various diseases, drugs and developmental processes. Good luck and have fun.Staticd (talk) 06:07, 13 October 2012 (UTC)

Morphine in World War 2

In WW2, US soldiers and flyers carried a "syrette" with a metal tube like that for toothpaste containing 0.5 grain of morphine tartrate, connected to a hypodermic needle for administering the drug subcutaneously to a wounded soldier, with no additional dose to be given for 2 hours. 1)(A question for better understanding of historical medical practice, not a request for medical advice:) Is that equivalent to a modern dose of 32.4 milligrams of morphine? [http://www.drugs.com/dosage/morphine.html drugs.com] says that a typical subcutaneous dose for an adult would be only "2.5 to 20 mg every 3 to 4 hours as needed " 2)In the 1977 movie "The Deep," divers find the wreck of "The Goliath," a ship which sank while carrying medical supplies to Europe in WW2, (based on some historical WW2 ship called the Constellation) and the presence of thousands of little glass ampules of liquid morphine excites the interest of criminals. Did Europeans (Brits, French and other non-Axis forces) inject their wounded from single-doseglass ampules (or perhaps at aid stations from multi-dose vials) with separate syringes, or were they supplied by 1940 with syrettes like US forces? (Or were they just expected to tough it out with a stiff upper lip and no morphine?) Thanks! Edison (talk) 03:11, 11 October 2012 (UTC)

:1) that's the correct equivalency; that's a big dose. -- Scray (talk) 04:42, 11 October 2012 (UTC)

::So big, in fact, that a second such dose would have been rapidly fatal (as the GIs themselves used to say, "One for pain and two for eternity"). Which is why the medics would put a big "M" on the wounded man's forehead after giving him morphine (as seen in war movies like Pearl Harbor, Saving Private Ryan, etc.) to make sure nobody else gave him a second dose by mistake. 24.23.196.85 (talk) 06:39, 11 October 2012 (UTC)

:::So when it says "0.5 grain," that is the effective dose of morphine, and whether it is in a "tartrate" of a "sulphate" compound is irrelevant? This website says the tartrate is only 87% as potent per mass: [http://www.bluelight.ru/vb/threads/273557-Morphine-Tartrate-Sulphate] . This table has some conversion tables, but when someone gets "morphine" from a doctor or paramedic today, what chemical form is it likely to be? On the web, some sites say that the dose from these same syrettes is only 16 milligrams: ]http://armymedical.tpub.com/md0913/md09130102.htm]. Is that just plain wrong? Question 3)Finally, were these military syrettes stolen or diverted and sold by criminals to civilian drug addicts in WW2 as an alternative to heroin, or would they have been converted to heroin or "cut" with something before being sold to addicts by criminals? Thanks. Edison (talk) 15:43, 11 October 2012 (UTC)

::::Tartrate ion has molecular mass of 148.07 daltons, sulfate ion has a mass of 96.06 daltons, and morphine has a molecular mass of 285.34 in neutral form. I think that one hydrogen ion is added to the alkaloid nitrogen in the morpholinium salt (286.35), which means that half a sulfate or tartrate should be needed per morpholinium to balance the charge. That gets us 334.38 for the sulfate ([http://www.osha.gov/dts/chemicalsampling/data/CH_255590.html half the molecular weight]) and 360.39 ([http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5359380]) for the tartrate for the same amount of morphine. However, as listed in the table in the morphine article, the actual drugs are hydrates. (This is an example of why Wikipedia shouldn't be taken as medical advice - I very nearly answered according to the non-hydrated weight, which would, at least hopefully, be technically accurate but quite irrelevant to your historical scenario. Not to mention the stupid mistakes I made in the math trying to calculate per morpholinium rather than per molecular weight, which, in retrospect, was probably not the best way to avoid errors!) The sulfate gets 5 H20 (5 x 18.01528 = 90.0764) (half that per morpholinium) and the tartrate gets 3 H20 (54.04584) making the final weights per morpholinium 379.42 (sulfate) and 387.42 [http://www.medsafe.govt.nz/profs/datasheet/d/dblMorphinetartrateinj.pdf] (tartrate). Our article lists them as equal to 0.75 (sulfate) and 0.74 (tartrate) the free base weight of morphine (285.34), which agrees within the level of error in the table. (0.7520, 0.7365). Wnt (talk) 17:58, 11 October 2012 (UTC)

:::::There are some errors in that table, it has Morphine phosphate (7 H2O) and Morphine phosphate (1/2 H2O) listed with the same freebase conversion factor. I'm not sure if the 0.5 grain would include the hydrate part. I've looked at pictures of the box these came in and it doesn't mention the hydrate. Don't know what the practice was then, but nowadays the dosage applies to the ingredient as it is written. Like 60 mg pseudo-ephedrine HCl, but dexedrine 5mg dextro-amphetamine (without the H2SO4) Ssscienccce (talk) 23:08, 11 October 2012 (UTC)

::::I found [http://www.awm.gov.au/collection/records/awmohww2/medical/vol4/part1/awmohww2-medical-vol4-part1-ch3.pdf Medical Services of the Royal Australian Navy] who presumably followed Royal Navy practice. "...the question of morphia administration was of great importance . Methods used before the war consisted of individual injections by the medical officers or possibly senior sick-berth ratings, using either tablets of morphine sulphate or hydrochloride in bulk solution from rubber-capped bottles. In addition, Wildey's syringe which enabled four or five doses to be given by the one full syringe was available in some ships. Obviously, however, it would be of considerable advantage in a ship, with its numerous isolated compartments, to have a foolproof syringe which would enable anyone, if the need arose, to give a correct dose to himself or to another. Hence the appearance of a self-giving syringe known as " tubunic " ampoule or syrette. Supplies of this article were very difficult to obtain but finally became available. Three types were used in the R.A.N.: the first from the United Kingdom, the second from the United States, and the third made in Australia . They were not extensively used and on the whole they proved a disappointment, by reason of the frequent collapse of the soft metal container or the blockage or breakage of the needle. The American article appeared to be the best." (p.25) So the US version seems to have been ahead of the game, but not available to Commonwealth forces until late in the war. I found a reference in [http://books.google.co.uk/books?id=_exswR1uFKMC&pg=PT31&lpg=PT31&dq=British+Army+morphine+1939-45&source=bl&ots=POKArndRZ3&sig=Dcb7nHwtqi4Rsem9vTl0A54vAv4&hl=en&sa=X&ei=gwF3UOD0K6mJ0AXy8ICwCw&ved=0CCEQ6AEwAA The British Army 1939-45 (3): The Far East, By Martin Brayley] about the Chindit columns that operated in the Burmese jungle behind Japanese lines; "Although it was never spoken of, it is clear that the helpless were often given a merciful overdose of morphine before being abandoned." (p.34) Alansplodge (talk) 17:51, 11 October 2012 (UTC)

:::::A further reference that partly answers your question about British use in 1940 is in [http://books.google.co.uk/books?id=1Hd53MKDBRoC&pg=PA13&lpg=PA13&dq=British+Army+morphine+1939&source=bl&ots=NyikkbIIAK&sig=Q9OisAwwIcK1C9I4co-9lIRFXMs&hl=en&sa=X&ei=fAh3UPe6D-2V0QWep4DIAQ&ved=0CDYQ6AEwAQ#v=onepage&q=British%20Army%20morphine%201939&f=false 56th Infantry Brigade and D-Day: An Independent Infantry Brigade, By Andrew Holborn], which includes the account of one soldier in France in January 1940; "Shrapnel (from a Stuka's bomb) hit me and I had a big red "X" on my forehead because I had been given morphine." (p.13) Alansplodge (talk) 18:07, 11 October 2012 (UTC)

::::::Thanks. Sounds like various allied forces were well supplied with morphine either in large vials for medical officers to administer or with syrettes. I could not find general US or Brit book on field hospital practice in WW2, but did find some brief booklets for frontline medics. Question 4)Any suggestions as to a WW2 vintage handbook for British military surgeons or physicians which would identify other drugs they used in hospital or aid stations in the combat zone which would have had a ready market for pushers to sell to addicts or other illicit civilian users? Edison (talk) 20:43, 11 October 2012 (UTC)

:::::::::"During World War II, the American, British, German, and Japanese armed forces similarly issued amphetamines to their men to counteract fatigue, elevate mood, and heighten endurance."[http://www.druglibrary.org/schaffer/library/studies/cu/cu36.html]. Alansplodge (talk) 01:19, 15 October 2012 (UTC)