C-type lectin
{{Pfam box
| Symbol = Lectin_C
| Name = Lectin C-type domain
| image = PDB 1jzn EBI.jpg
| width =
| caption = Pentameric structure of rattlesnake venom lectin which is a galactose binding lectin.{{cite journal |vauthors=Walker JR, Nagar B, Young NM, Hirama T, Rini JM |title=X-ray crystal structure of a galactose-specific C-type lectin possessing a novel decameric quaternary structure |journal=Biochemistry |volume=43 |issue=13 |pages=3783–92 |date=April 2004 |pmid=15049685 |doi=10.1021/bi035871a }}{{cite journal | vauthors = Mahla RS, Reddy MC, Prasad DV, Kumar H | title = Sweeten PAMPs: Role of Sugar Complexed PAMPs in Innate Immunity and Vaccine Biology | journal = Frontiers in Immunology | volume = 4 | pages = 248 | date = September 2013 | pmid = 24032031 | pmc = 3759294 | doi = 10.3389/fimmu.2013.00248 | doi-access = free }}
| Pfam= PF00059
| InterPro= IPR001304
| SMART= CLECT
| Prosite = PS50041
| SCOP = 2msb
| TCDB =
| OPM family=
| OPM protein=
| CDD = cd00037
| PDB=
| Membranome family =
}}
A C-type lectin (CLEC) is a type of carbohydrate-binding protein known as a lectin.{{cite journal |vauthors=Zelensky AN, Gready JE |title=The C-type lectin-like domain superfamily |journal=FEBS J. |volume=272 |issue=24 |pages=6179–217 |date=December 2005 |pmid=16336259 |doi=10.1111/j.1742-4658.2005.05031.x |s2cid=7084402 }} The C-type designation is from their requirement for calcium for binding.{{MeshName|C-Type+Lectin}} Proteins that contain C-type lectin domains have a diverse range of functions including cell-cell adhesion, immune response to pathogens and apoptosis.{{cite journal |author=Drickamer K |title=C-type lectin-like domains |journal=Curr. Opin. Struct. Biol. |volume=9 |issue=5 |pages=585–90 |date=October 1999 |pmid=10508765 |doi= 10.1016/S0959-440X(99)00009-3}}{{cite journal |vauthors=Cambi A, Figdor C |title=Necrosis: C-type lectins sense cell death |journal=Curr. Biol. |volume=19 |issue=9 |pages=R375–8 |date=May 2009 |pmid=19439262 |doi=10.1016/j.cub.2009.03.032 |s2cid=17409821 |doi-access=free |bibcode=2009CBio...19.R375C }}
Classification
Drickamer et al. classified C-type lectins into 7 subgroups (I to VII) based on the order of the various protein domains in each protein.{{cite journal |author=Drickamer K |title=Evolution of Ca(2+)-dependent animal lectins |journal=Prog. Nucleic Acid Res. Mol. Biol. |volume=45 |pages=207–32 |year=1993 |pmid=8341801 |doi= 10.1016/S0079-6603(08)60870-3|series=Progress in Nucleic Acid Research and Molecular Biology |isbn=978-0-12-540045-9|doi-access=free }} This classification was subsequently updated in 2002, leading to seven additional groups (VIII to XIV).{{cite journal |vauthors=Drickamer K, Fadden AJ |title=Genomic analysis of C-type lectins |journal=Biochem. Soc. Symp. |volume= 69|issue=69 |pages=59–72 |year=2002 |pmid=12655774 |doi= 10.1042/bss0690059}} Most recently, three further subgroups were added (XV to XVII).
class="wikitable" | ||
Group | Name | Associated domains |
---|---|---|
I | Lecticans | EGF, Sushi, Ig and Link domains |
II | Asialoglycoprotein and DC receptors | None |
III | Collectins | None |
IV | Selectins | Sushi and EGF domains |
V | NK - cell receptors | None |
VI | Multi-CTLD endocytic receptors | FnII and Ricin domains |
VII | Reg group | None |
VIII | Chondrolectin, Layilin | None |
IX | Tetranectin | None |
X | Polycystin | WSC, REJ, PKD domains |
XI | Attractin (ATRN) | PSI, EGF and CUB domains |
XII | Eosinophil major basic protein (EMBP) | None |
XIII | DGCR2 | None |
XIV | Thrombomodulin, CD93, CD248, CLEC14A | EGF domains {{cite journal |title=C-type lectin domain group 14 proteins in vascular biology, cancer and inflammation. |journal=FEBS Journal |year=2019 |pmid=31287944|last1=Khan |first1=K. A. |last2=McMurray |first2=J. L. |last3=Mohammed |first3=F. |last4=Bicknell |first4=R. |volume=286 |issue=17 |pages=3299–3332 |doi=10.1111/febs.14985 |pmc=6852297 }} |
XV | Bimlec | None |
XVI | SEEC | SCP and EGF domains |
XVII | CBCP/Frem1/QBRICK | CSPG repeats and CalX-beta domains |
CLECs include:
- CLEC1A, CLEC1B
- CLEC2A, CLEC2B, CD69 (CLEC2C), CLEC2D, CLEC2L
- CLEC3A, CLEC3B
- CLEC4A, CLEC4C, CLEC4D, CLEC4E, CLEC4F, CLEC4G, ASGR1 (CLEC4H1), ASGR2 (CLEC4H2), FCER2 (CLEC4J), CD207 (CLEC4K), CD209 (CLEC4L), CLEC4M
- CLEC5A
- CLEC6A
- CLEC7A
- OLR1 (CLEC8A)
- CLEC9A
- CLEC10A
- CLEC11A
- CLEC12A, CLEC12B
- CD302 (CLEC13A), LY75 (CLEC13B), PLA2R1 (CLEC13C), MRC1 (CLEC13D), MRC2 (CLEC13E)
- CLEC14A
- CLEC16A
- CLEC17A
The "NK Cell lectin-like receptors" are a very closely related group:{{MeshName|NK+Cell+Lectin-Like+Receptors}}
- KLRA1
- KLRB1 (CLEC5B)
- KLRC1, KLRC2, KLRC3, KLRC4
- KLRD1
- KLRF1 (CLEC5C)
- KLRG1 (CLEC15A), KLRG2 (CLEC15B)
- KLRK1
Additional proteins containing this domain include:
- AGC1; ATRNL1
- BCAN
- CD248; CD72; CD93; CHODL; CL-K1-Ia; CL-K1-Ib; CL-K1-Ic; CLECSF5; COLEC10; COLEC11; COLEC12; CSPG3
- FCER2; FREM1; HBXBP;
- LAYN; LOC348174; LOC728276
- MAFA; MBL2; MGC34761; MICL; MRC1L1
- OLR1
- PAP; PKD1; PKD1L2; PLA2R1; PRG2; PRG3
- REG1A; REG1B; REG3A; REG3G; REG4
- SELE; SELL; SELP; SFTPA1; SFTPA2; SFTPA2B; SFTPD; SRCL
- THBD
- VCAN
References
{{reflist}}
External links
- [http://www.functionalglycomics.org/ Functional Glycomics Gateway], a collaboration between the Consortium for Functional Glycomics and Nature Publishing Group
{{Lectins}}
{{DEFAULTSORT:C-Type Lectin}}